Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20942
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    27   3.3  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   5.8  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   7.7  
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    25   7.7  

>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 448 IYLLNSVRKDISMSNNMFYLTRCYS 522
           IYL N++  ++   N++FY  +C+S
Sbjct: 10  IYLNNTLLSEVPEPNSVFYTPKCFS 34


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 9   SINYNFILKKSILINEKDIFITVHNNIFKWST 104
           S N++F+ KK + + + D    VH  +  W+T
Sbjct: 222 SENWDFVWKKLLQLVKTDGLAVVHTLVLNWNT 253


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 374 NIRSPKNKY-SVVKRNNHCESNDLHP 448
           N  +P NK+ + V RN H ES   HP
Sbjct: 594 NSNTPFNKFPNSVSRNTHFESKSPHP 619


>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 424 LRKQRSSPIYLLNSVRKDISMSNNMFYLTRCYSFVL 531
           L K   +P  + N ++K  ++SN++ Y ++ YSF++
Sbjct: 65  LNKNYPNPSIISNIIQK--ALSNHLLYSSKNYSFIV 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,547
Number of Sequences: 5004
Number of extensions: 56987
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)