Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20941
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    29   0.90 
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    27   2.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   2.1  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   2.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   8.4  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   8.4  

>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 189 RLGVQIERSGAL-ISSWGCVRRVPYQYLKYTIYTYRPYPTVESHNDY 326
           RLG+QIE       SSW CVRR+         Y Y    T E  + +
Sbjct: 8   RLGLQIENKFVFRSSSWNCVRRIGKIACNENKYRYEMTSTEEDIDSF 54


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 429 SVYNEIESIFSIFPNPILIMGD-FNAQHVAWGSSISNHYGSRLLDMVDKYKWCILNTGKE 253
           S Y+ + S        + I+GD   A+H  WG  + +  G+R    +DK    I     +
Sbjct: 114 STYDRLWSTLPYLRPLVTIIGDSLQARHDEWGGRVHDTLGTRCDPYIDK---LISGKDND 170

Query: 252 LVAHNPMKKSV 220
           L  H+ + +++
Sbjct: 171 LHCHSNLTRAI 181


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 447 IPHPTSSVYNEIESIFSIFPNPI 379
           IPH TSSV N+I S+     +PI
Sbjct: 134 IPHTTSSVSNDIPSVLGSSDHPI 156


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 534 TNIIFNEKCYTSISI*PIFTNTRVFGNSKIKTW 632
           T I+FN  C +S +  P+FT T+V    K K W
Sbjct: 97  TLIMFNTVCSSSPN--PVFTLTKVIARKKGKHW 127


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 291 DKYKWCILNTGKELVAH 241
           +KYKWCIL+  KE V +
Sbjct: 315 EKYKWCILDGRKEKVGN 331


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 256  GTRRTQPHEEISAPDLSICTPNLASIVSWNILSSSYGSDHFPI 128
            GT    P   ++   LS+C+    SIV W++ S  +   ++ +
Sbjct: 1246 GTHAASPRSSMTVKPLSLCSSGYESIV-WDLTSILFDPKNYSL 1287


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
 Frame = -1

Query: 456 SLYIPHPTSSVYNEIE----SIFSIFPNPILIM----GDFNAQHVAWGSSISNH--YGSR 307
           +++I +P  S Y  +      ++  F NP ++     G  N    A+GS+ S    +   
Sbjct: 440 NIFIKNPNGSAYVGMAWPGFVVYPDFTNPAVLQYWKQGILNLS-TAFGSNYSYDLPFSGL 498

Query: 306 LLDMVDKYKWCILNTGKELVAHNPM 232
            LDM +   +CI + G +L+  NP+
Sbjct: 499 CLDMNEPTSFCIGSCGSDLLKLNPV 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,528
Number of Sequences: 5004
Number of extensions: 57985
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)