Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20941
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922...    32   0.54 
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858...    30   2.2  
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132...    28   8.7  

>04_04_0792 -
           28091597-28091675,28091853-28091908,28092151-28092211,
           28092290-28092363,28092865-28092945,28093127-28093201,
           28093276-28093395,28093486-28093566,28093644-28093712,
           28094057-28094128,28094220-28094362,28094452-28094566,
           28094651-28094774,28095124-28095476,28096035-28096374,
           28096914-28097124,28097209-28097482,28097570-28097788,
           28097868-28098004,28098117-28098375
          Length = 980

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 193 NLASIVSWNILSSSYGSDHFPIVINFPIATSSRTKCRSPRMKFKLENANWFSFK 32
           N+ SI+S  +    +  D F + I+ P   ++  +     MK K  +ANWF  K
Sbjct: 561 NVTSIISEAVQREGHQVDEFSLEISLPAVIAANDRAIRLYMKEKYGSANWFDEK 614


>11_04_0079 -
           13284869-13284929,13285518-13285639,13285749-13285820,
           13286048-13286200,13289510-13289709,13289745-13289947,
           13289991-13290181
          Length = 333

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 556 SATPPYPSDLSSRIQEYLGILKLKPGRSQVSCKEIKKRLIFIC*IDNVT 702
           S  P + S     ++E LGILK +P R  + C      L +    DNVT
Sbjct: 217 SLIPKFESMDRKILKEELGILKHRPPRPSIQCVSYSNYLSYFWANDNVT 265


>04_03_0558 +
           17111138-17111996,17112474-17112564,17112647-17113268,
           17113378-17113457,17113871-17113937,17114138-17114263,
           17114333-17114415,17115334-17115777,17115834-17115927,
           17116038-17116124,17116474-17116594,17116671-17116709,
           17116828-17116997
          Length = 960

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 261 GKELVAHNPMKKSVPLIFQSVLLI*LLSFPGIFYLLVMVAIIF 133
           GKE++  NP  KS P++ +  L      +  IFY   ++ ++F
Sbjct: 764 GKEMIPINPRAKSTPMVKKFSL---RTEYTAIFYSWALIILVF 803


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,912,042
Number of Sequences: 37544
Number of extensions: 326951
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)