Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20941
         (729 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ251004-1|CAB61345.1| 1873|Homo sapiens integrin beta 4 protein.      31   5.6  

>AJ251004-1|CAB61345.1| 1873|Homo sapiens integrin beta 4 protein.
          Length = 1873

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 441  HPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNH 319
            HP  S Y+ I +  +    P L+     AQH+  G S++ H
Sbjct: 1806 HPLQSEYSSISTTHTSATEPFLVGPTLGAQHLEAGGSLTRH 1846


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,534,990
Number of Sequences: 237096
Number of extensions: 1924458
Number of successful extensions: 3220
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3220
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)