Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20941
(729 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 60 3e-09
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 52 6e-07
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 46 5e-05
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 46 5e-05
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 41 0.002
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 41 0.002
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 38 0.014
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 37 0.024
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 35 0.099
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 35 0.13
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 32 0.70
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 31 2.1
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 30 2.8
AE014296-1817|AAN11914.1| 573|Drosophila melanogaster CG32058-P... 30 3.7
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 29 4.9
AF053091-1|AAC06254.1| 2715|Drosophila melanogaster eyelid protein. 29 6.5
AE014297-2398|AAN13750.1| 2716|Drosophila melanogaster CG7467-PB... 29 6.5
AE014297-2397|AAS65166.1| 2556|Drosophila melanogaster CG7467-PC... 29 6.5
AE014297-2396|AAF55457.1| 2703|Drosophila melanogaster CG7467-PA... 29 6.5
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 29 8.6
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 29 8.6
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 29 8.6
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 29 8.6
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 29 8.6
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 60.1 bits (139), Expect = 3e-09
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = -3
Query: 235 HEEISAPDLSICTPNLASIVSWNILSSSYGSDHFPIVINFPIATSSRTKCRSPRMKFKLE 56
H + D+S+ +P +A + SW+I + +GSDHFPI I+ I T +R P K+K +
Sbjct: 178 HNTFTHIDISLISPQIAHMCSWSISDNLHGSDHFPITIH--INTPTRPDNTLPLPKYKTD 235
Query: 55 NANWFSFKEEVEK 17
ANW F E EK
Sbjct: 236 QANWKRFNESCEK 248
Score = 34.7 bits (76), Expect = 0.13
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -1
Query: 459 VSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMVDKYK 280
V+ YIP ++I I +++GD N+ WGS +N G ++ ++ +
Sbjct: 104 VNAYIPPSQIFSSSDISEILQNLNGSTILLGDLNSWSPLWGSPRTNTRGKKIETVILENS 163
Query: 279 WCILNTGK--ELVAHN 238
+LN G L HN
Sbjct: 164 LIVLNDGSPTHLSTHN 179
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 52.4 bits (120), Expect = 6e-07
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = -3
Query: 235 HEEISAPDLSICTPNLASIVSWNILSSSYGSDHFPIVIN-FPIATSSRTKCRSPRMKFKL 59
H + DL++C+P LA W IL+ +GSDHFPI+ FP T++ K P FKL
Sbjct: 174 HNTYTHIDLTLCSPILAPHAKWKILNDLHGSDHFPIITTLFP--TTNPQKFYRP--FFKL 229
Query: 58 ENANWFSF 35
+ ANW F
Sbjct: 230 KEANWEQF 237
Score = 43.6 bits (98), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = -1
Query: 489 IAITINNICYVSLYIPH--PTSSVYNE-IESIFSIFPNPILIMGDFNAQHVAWGSSISNH 319
IAI I + ++++ + PT ++ N+ + + F+I P LI GDFN H WGS +N
Sbjct: 87 IAINIESKLKLNIFSTYISPTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPWGSPTTNK 146
Query: 318 YGSRLLDMVDKYKWCILN 265
G +D +LN
Sbjct: 147 RGKITHRFIDNMHLILLN 164
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 46.0 bits (104), Expect = 5e-05
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = -1
Query: 480 TINNICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLL 301
++ + ++Y+P + ++ +S+F+ N + GD+NA+H WG+ S G L
Sbjct: 100 SVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQ 159
Query: 300 DMVDKYKWCILNTGK-ELVAHNPM 232
+++ ++ +L TG+ ++NP+
Sbjct: 160 EVIAHGQYQVLATGEPTFYSYNPL 183
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 46.0 bits (104), Expect = 5e-05
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = -1
Query: 480 TINNICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLL 301
++ + ++Y+P + ++ +S+F+ N + GD+NA+H WG+ S G L
Sbjct: 100 SVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQ 159
Query: 300 DMVDKYKWCILNTGK-ELVAHNPM 232
+++ ++ +L TG+ ++NP+
Sbjct: 160 EVIAHGQYQVLATGEPTFYSYNPL 183
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 41.1 bits (92), Expect = 0.002
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 492 IIAITINNICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYG 313
+I + I + ++Y P + +E + I F ++ GD+NA H WG+ SN G
Sbjct: 95 VIETALGPISFGAVYCPPRFAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQRG 154
Query: 312 SRLLDMV 292
L ++V
Sbjct: 155 IALANLV 161
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 40.7 bits (91), Expect = 0.002
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = -2
Query: 719 ALALRNVTLSI*QI--NINLFLISLQETWLRPGFNFRIPKYSCIREDRSDGY-GGVALLI 549
A A+RN + + + N ++ + + ETWL F IP+Y+ R DR + GGVA+ +
Sbjct: 19 ARAVRNKRIELIKFLENNHIHIALINETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAV 78
Query: 548 KNNISFSQ 525
N + Q
Sbjct: 79 SNTLIHEQ 86
Score = 37.9 bits (84), Expect = 0.014
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = -1
Query: 477 INNICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLD 298
I + C +S H S +++ I I N LI GDFN++H AW + +N +G L +
Sbjct: 125 IPSSCDLSWDHNHLKSLYRSDLLKISQINGN-FLICGDFNSRHRAWKCTRANGWGKILNE 183
Query: 297 MVDKYKWCIL-NTGKELVAHNPMKKSVPL 214
+ D K+ IL T + HN K+ L
Sbjct: 184 LSDLGKFSILYPTQPTYIPHNHKAKASTL 212
Score = 29.9 bits (64), Expect = 3.7
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -3
Query: 238 PHE-EISAPDLSICTPNLASIVSWNILSSSYGSDHFPIVINFPIATSSRTKCRSPRMKFK 62
PH + A L +C N+ + ++ + SDH P+VI + S R+ +
Sbjct: 202 PHNHKAKASTLDLCLTNIPNQLANPAVMQELSSDHLPVVIKY-----STNFMRNVKTYPI 256
Query: 61 LENANWFSFKEEVEK 17
L ANW FK + +
Sbjct: 257 LGRANWALFKRIINE 271
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 37.9 bits (84), Expect = 0.014
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = -1
Query: 477 INNICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLD 298
I + C +S H S +++ I I N LI GDFN++H AW + +N +G L +
Sbjct: 73 IPSSCDLSWDHNHLKSLYRSDLLKISQINGN-FLICGDFNSRHRAWKCTRANGWGKILNE 131
Query: 297 MVDKYKWCIL-NTGKELVAHNPMKKSVPL 214
+ D K+ IL T + HN K+ L
Sbjct: 132 LSDLGKFSILYPTQPTYIPHNHKAKASTL 160
Score = 29.9 bits (64), Expect = 3.7
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -3
Query: 238 PHE-EISAPDLSICTPNLASIVSWNILSSSYGSDHFPIVINFPIATSSRTKCRSPRMKFK 62
PH + A L +C N+ + ++ + SDH P+VI + S R+ +
Sbjct: 150 PHNHKAKASTLDLCLTNIPNQLANPAVMQELSSDHLPVVIKY-----STNFMRNVKTYPI 204
Query: 61 LENANWFSFKEEVEK 17
L ANW FK + +
Sbjct: 205 LGRANWALFKRIINE 219
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 37.1 bits (82), Expect = 0.024
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -1
Query: 384 PILIMGDFNAQHVAWGSSISNHYGSRLLDMVDKYKWCILNTGKELVAHNPMKKS-VPLIF 208
P +I GD NA WGS ISN G ++D ++ +LN G + +N S + + F
Sbjct: 119 PTVIGGDLNAWATEWGSRISNTRGRAVIDAMNLLDLVLLNDGFKPTFNNDRGTSFIDVTF 178
Query: 207 QSVLLI 190
S +L+
Sbjct: 179 VSRVLV 184
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 35.1 bits (77), Expect = 0.099
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 489 IAITINN--ICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHY 316
IA+ +NN ++Y P ++ F+ + + GD+NA+H WGS + +
Sbjct: 93 IALQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVSPK 152
Query: 315 GSRLLDMVDK 286
G +L + + K
Sbjct: 153 GKQLYNALTK 162
Score = 32.3 bits (70), Expect = 0.70
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -2
Query: 707 RNVTLSI*QININLFLISLQETWLRPGFNFRIPKYSCIREDRSDG--YGGVALLIKNNI 537
+ +T I + NI++ L+S ET L NF IP Y + DG +GG +LI+N I
Sbjct: 19 QELTQFIYEKNIDVMLLS--ETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRI 75
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 34.7 bits (76), Expect = 0.13
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -1
Query: 489 IAITINN--ICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHY 316
IA+ +NN ++Y P ++ F+ + + GD+NA+H WGS +
Sbjct: 93 IALQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVTPK 152
Query: 315 GSRLLDMVDK 286
G +L + + K
Sbjct: 153 GKQLYNALTK 162
Score = 32.3 bits (70), Expect = 0.70
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -2
Query: 707 RNVTLSI*QININLFLISLQETWLRPGFNFRIPKYSCIREDRSDG--YGGVALLIKNNI 537
+ +T I + NI++ L+S ET L NF IP Y + DG +GG +LI+N I
Sbjct: 19 QELTQFIYEKNIDVMLLS--ETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRI 75
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 32.3 bits (70), Expect = 0.70
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -1
Query: 456 SLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMVDK 286
++Y P + + + F + GD+NA+H WGS + N G +L + K
Sbjct: 107 AVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVNPKGKQLYKTIIK 163
Score = 30.3 bits (65), Expect = 2.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 653 LQETWLRPGFNFRIPKYSCIREDRSDG--YGGVALLIKNNI 537
L ET L +NF+I Y + DG +GG A+LI+N +
Sbjct: 35 LSETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRM 75
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 30.7 bits (66), Expect = 2.1
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = -1
Query: 489 IAITINNICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGS 310
+A + ++ + ++Y T I L+ GD+NA+H WG + ++ G
Sbjct: 97 VATGLGDLQFSAIYCSPSTRIEERHFTDIIRACGQRYLVGGDWNARHWLWGDTCNSPRGR 156
Query: 309 RLLDMVDKYKWCILNTG 259
L + + IL TG
Sbjct: 157 ELAEALSVTGAKILATG 173
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 30.3 bits (65), Expect = 2.8
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 465 CYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMV 292
C SL ++PH + V N E ++ GD+NA+H WG + + G+ L + V
Sbjct: 120 CPPSLRWLPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWGCTRACQRGTALYEAV 177
>AE014296-1817|AAN11914.1| 573|Drosophila melanogaster CG32058-PA
protein.
Length = 573
Score = 29.9 bits (64), Expect = 3.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 237 GCVRRVPYQYLKYTIYTYRPYPTVESH 317
G + + ++ ++YTY+PYP VE H
Sbjct: 125 GFIHVLALNFMNGSLYTYKPYPKVEVH 151
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 29.5 bits (63), Expect = 4.9
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 465 CYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMV 292
C SL + PH + V N E +++ GD+NA+H WG + G+ L D +
Sbjct: 132 CPPSLSWSPHHFTDVLNFAEKTMG-GQTKLILCGDWNAKHRQWGCIRACQRGAALYDAI 189
>AF053091-1|AAC06254.1| 2715|Drosophila melanogaster eyelid protein.
Length = 2715
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 235 HEEISAPDLSICTPNLASIVSWNILSSSYGSDHFP 131
H E+S D I P + ++ W + S++G D FP
Sbjct: 2288 HLELSRYDELIARPLIDGLLHWAVCPSAHGQDPFP 2322
>AE014297-2398|AAN13750.1| 2716|Drosophila melanogaster CG7467-PB,
isoform B protein.
Length = 2716
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 235 HEEISAPDLSICTPNLASIVSWNILSSSYGSDHFP 131
H E+S D I P + ++ W + S++G D FP
Sbjct: 2289 HLELSRYDELIARPLIDGLLHWAVCPSAHGQDPFP 2323
>AE014297-2397|AAS65166.1| 2556|Drosophila melanogaster CG7467-PC,
isoform C protein.
Length = 2556
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 235 HEEISAPDLSICTPNLASIVSWNILSSSYGSDHFP 131
H E+S D I P + ++ W + S++G D FP
Sbjct: 2129 HLELSRYDELIARPLIDGLLHWAVCPSAHGQDPFP 2163
>AE014297-2396|AAF55457.1| 2703|Drosophila melanogaster CG7467-PA,
isoform A protein.
Length = 2703
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 235 HEEISAPDLSICTPNLASIVSWNILSSSYGSDHFP 131
H E+S D I P + ++ W + S++G D FP
Sbjct: 2276 HLELSRYDELIARPLIDGLLHWAVCPSAHGQDPFP 2310
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 465 CYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMV 292
C SL + PH + V N E ++ GD+NA+H WG + + G+ L + V
Sbjct: 4 CPPSLSWSPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWGCTRACQRGTALYEAV 61
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 465 CYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMV 292
C SL + PH + V N E ++ GD+NA+H WG + + G+ L + V
Sbjct: 120 CPPSLSWSPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWGCTRACQRGTALYEAV 177
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 465 CYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMV 292
C SL + PH + V N E ++ GD+NA+H WG + + G+ L + V
Sbjct: 120 CPPSLSWSPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWGCTRACQRGTALYEAV 177
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 465 CYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMV 292
C SL + PH + V N E ++ GD+NA+H WG + + G+ L + V
Sbjct: 82 CPPSLSWSPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWGCTRACQRGTALYEAV 139
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 465 CYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMV 292
C SL + PH + V N E ++ GD+NA+H WG + + G+ L + V
Sbjct: 120 CPPSLSWSPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWGCTRACQRGTALYEAV 177
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,708,887
Number of Sequences: 53049
Number of extensions: 567016
Number of successful extensions: 1214
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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