Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20941
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    48   9e-06
Z78536-1|CAB01715.2|  417|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U39850-10|AAA81060.2|  439|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z49889-6|CAA90069.2|  435|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z49887-7|CAA90060.2|  435|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = -3

Query: 226 ISAPDLSICTPNLASIVSWNILSSSYGSDHFPIVINFPIATSSRTKCRSPRMKFKLENAN 47
           IS+PD++ICT +LA+   W+ L    GSDH P+ +       + T  R  R+    + AN
Sbjct: 86  ISSPDITICTADLATKCHWSTL-YKLGSDHIPMKLKI---NQAATPKRPKRLVANFKKAN 141

Query: 46  WFSFKEEVEKVI 11
           W  F++ +E  I
Sbjct: 142 WQLFRDHIESRI 153



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = -1

Query: 456 SLYIP-HPTSSVYNEIESIFS-IFP--NPILIMGDFNAQHVAWGSSIS-NHYGSRLLDMV 292
           ++Y+P   +SS +  + + FS IF   +  +I GD NA H AW S  S +  G  L +++
Sbjct: 5   NVYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAELI 64

Query: 291 D 289
           D
Sbjct: 65  D 65


>Z78536-1|CAB01715.2|  417|Caenorhabditis elegans Hypothetical
           protein C07A4.2 protein.
          Length = 417

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 165 IFQETIEARLGVQIERSGALISSWGCVRRVPYQYLKYTIYTYRPYPTVESHNDY 326
           I++ + +  +GV I +S ++ S   CV   P  Y  Y +  Y P    ESH  Y
Sbjct: 357 IWKNSRKIGVGVSIVKSSSIRSP--CVSSSPNMYFIYVVVKYDPAGNFESHKAY 408


>U39850-10|AAA81060.2|  439|Caenorhabditis elegans Hypothetical
           protein F52C9.3 protein.
          Length = 439

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 194 RSTD*KIRGTDFFMGLCA--TSSLPVFKIHHLYLSTISNSRE 313
           RSTD K  GTDF     A   S+LP + IH LY+S+ +  ++
Sbjct: 370 RSTDEKFYGTDFLANSVAFKISALPSY-IHRLYISSNATPKD 410


>Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical
           protein F26D2.3a protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -2

Query: 671 NLFLISLQETWLRPGFNFRIPKYSCI-REDRSDGYGGVALLIKNNI 537
           N+F++ + E++   G N  +  Y+C+ R + S G+G + LL  +++
Sbjct: 188 NVFVLPVTESYDSKGHNINLAHYNCMKRLEASRGWGYLMLLQNHDV 233


>Z49889-6|CAA90069.2|  435|Caenorhabditis elegans Hypothetical
           protein T06H11.4 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -1

Query: 363 FNAQHVAWGSSISNHYGSRLLDMVDKYKWCILNTGKELVAHNPMKKSVPL 214
           F AQ  +    I N +G R + +  K    +++TG ELV  +PM ++VPL
Sbjct: 165 FEAQIGSAEFGILNAFGIRTIKVYKKPVVTVISTGSELV--SPMVENVPL 212


>Z49887-7|CAA90060.2|  435|Caenorhabditis elegans Hypothetical
           protein T06H11.4 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -1

Query: 363 FNAQHVAWGSSISNHYGSRLLDMVDKYKWCILNTGKELVAHNPMKKSVPL 214
           F AQ  +    I N +G R + +  K    +++TG ELV  +PM ++VPL
Sbjct: 165 FEAQIGSAEFGILNAFGIRTIKVYKKPVVTVISTGSELV--SPMVENVPL 212


>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 538 ILFLMRSATPPYPSDLSSRIQEYLG-ILKL 624
           +LFL+  A PPY  +LS +  EY+G +LKL
Sbjct: 816 LLFLI--ANPPYSDELSMKAFEYIGELLKL 843


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,292,620
Number of Sequences: 27780
Number of extensions: 309114
Number of successful extensions: 776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)