Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20940
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    29   0.66 
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    28   1.5  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   2.7  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   3.5  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   6.2  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   6.2  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +2

Query: 77  DKHAARNDFRRFEEENASNERGNGKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPTYP 253
           D H++R   R++E+E       NGK   R  G P  + SGN A   S      P   YP
Sbjct: 3   DSHSSR---RKYEKEKLVFATNNGK---RTEGTPAFLKSGNTASSSSPTLQFRPTSRYP 55


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = +2

Query: 305  AKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRWRATCS 484
            ++L E S+  D SE+     EN  N   +R+A LE+ LS    +  ++ R  ++ R   S
Sbjct: 930  SRLFEISKQLDNSEQ-----EN--NKFRERIAELESHLSNYAEAKLAQERELEQTRVLIS 982

Query: 485  YXXXXXXXXXXXXQSDCKIVELEEELRVVGN-NLKSLEVS 601
                         + +  ++ +EEE+R V + N + L V+
Sbjct: 983  DQSQDGELKELLEEKENALIMMEEEMRQVNDANTELLRVN 1022


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 311 LSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTK 463
           LSE   AA    R  + LEN T +E      L A L ++ S  +S  + +K
Sbjct: 181 LSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESK 231


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 189 ATVCGTPRTRPYIFPFPLSFDAFSSSKRLKSFLAACLS 76
           A+V GTP  RP  F FP      S  K+     A  +S
Sbjct: 771 ASVDGTPMVRPLFFEFPKQISLASVDKQFMIGTALLIS 808


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 446 DSSAMSSPVTVEPPRWQRDHPPCWCGSPAPCVFARIHRRPG 324
           D+    SP +  PP + + HPP    + AP +  R+   PG
Sbjct: 140 DTVISDSPTSPHPPSFVQPHPPYGIFA-APILDVRVLTNPG 179


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 587 SLEVSEEKATKREETYETHLKLLDAQLK 670
           ++E  EE + +  ETYE  +  L+AQL+
Sbjct: 211 TIECLEESSNRAIETYENRIAELEAQLE 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,809
Number of Sequences: 5004
Number of extensions: 36554
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)