Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20940
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 31 0.69
01_04_0051 + 15430980-15431591 31 1.2
05_04_0140 - 18358997-18359082,18359255-18359318,18359469-183595... 29 4.9
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 28 6.4
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450... 28 6.4
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 28 8.5
11_06_0238 - 21614535-21615347,21616759-21617352 28 8.5
11_04_0221 + 15021145-15022497 28 8.5
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337... 28 8.5
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 28 8.5
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 536 KIVELEEELRVVGNNLKSLEVSEEKATKREE 628
+IVE+EEE R++ L+ +V+EEKA REE
Sbjct: 159 EIVEMEEEKRLMSRKLR--KVAEEKAAAREE 187
>01_04_0051 + 15430980-15431591
Length = 203
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 244 DVSNAGGGPREVRGASRDRHRQAVRGQP 327
D+ + GG P V+ A RD HR+A+R +P
Sbjct: 88 DLVDNGGAPAWVQDARRDAHRRALRRRP 115
>05_04_0140 -
18358997-18359082,18359255-18359318,18359469-18359583,
18360101-18360216,18360420-18360541,18360628-18360757,
18361328-18361420
Length = 241
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 305 AKLSEASQAADESERIRKALENRTNMEDDR--VAILEAQLSQANSSPRSRTR 454
A+ + Q +D R+ AL + N ED + +LEA L Q+NS ++R +
Sbjct: 38 AEAANEEQKSDSIMRLSWALVHSKNQEDVNRGIGMLEASLGQSNSPLQTREK 89
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 347 RIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRWR 472
R RKAL N ++ E++ + + AN SPR R R R R
Sbjct: 104 RRRKALPNGSDPENEESRSSKMAVRSANISPRGRGRGRGRGR 145
>05_01_0521 +
4500268-4500283,4500364-4500680,4500999-4501094,
4501219-4501296,4501333-4501557,4502842-4502910,
4502946-4503200
Length = 351
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 247 VSNAGG-GPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHGG 387
V ++GG G R RG R R RG GR ++ ++ PH+H G
Sbjct: 33 VGDSGGRGGRGGRGGRTPRGRGGGRGGGGRGGMKGGSKVVVVPHKHDG 80
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 434 MSSPVTVEPPRWQRDHPPCWCGSPAPC 354
M++P VE P W P C +P PC
Sbjct: 213 MATPTMVEIPSWPAAPAPPSCCAPPPC 239
>11_06_0238 - 21614535-21615347,21616759-21617352
Length = 468
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 231 PLRTQLLLFA*FPLATVCGTPRTRPYIFPFPLSFDAF 121
P+ Q+L A V G RPYI F ++FD F
Sbjct: 312 PMSEQILFLASLVARRVFGLAGVRPYIPDFKMAFDHF 348
>11_04_0221 + 15021145-15022497
Length = 450
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/68 (29%), Positives = 26/68 (38%)
Frame = -1
Query: 446 DSSAMSSPVTVEPPRWQRDHPPCWCGSPAPCVFARIHRRPGWPRTAWRWRSRDAPRTSRG 267
D+ S P E P W G P A + + W +RDAPRT+
Sbjct: 289 DAHYCSQPSRYEQPEWMA----AGYGDE-PASVAALPEHVLYVVAEWDSPARDAPRTTPP 343
Query: 266 PPPALDTS 243
PPP + S
Sbjct: 344 PPPPVHVS 351
>02_04_0554 -
23831212-23832163,23833173-23833438,23833694-23833748,
23834384-23834436,23834512-23834588,23834730-23834862,
23834958-23835098,23835840-23835960,23836137-23836242,
23836523-23836592,23836716-23836885,23837253-23837277,
23837662-23837777,23838926-23839217
Length = 858
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 389 HPPCWCGSP-APCVFARIHRRPGWPRTAWRWRSRDAPRTSR 270
HPP P AP ++A + R P +P AW+WR A +R
Sbjct: 14 HPPALRARPLAPHLYAALPRAP-YP--AWQWRGARAASPAR 51
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 362 LENRTNMEDDRVAILEAQLSQANSSPRSRTRNTK 463
LEN T EDD+ +LE LS++ S+ + R +TK
Sbjct: 47 LENGTVKEDDKTVLLEGGLSKSPST-KFRINSTK 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,362,703
Number of Sequences: 37544
Number of extensions: 327040
Number of successful extensions: 1228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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