Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20940
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 84   1e-16
SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.)                45   5e-05
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.)                38   0.008
SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)               36   0.025
SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)           35   0.076
SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)               34   0.10 
SB_27455| Best HMM Match : Extensin_2 (HMM E-Value=0.75)               32   0.53 
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_3732| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_49163| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_2494| Best HMM Match : M (HMM E-Value=0.0056)                       29   5.0  
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
 Frame = +2

Query: 293 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRWR 472
           A    +L+EA + ADESER RK LENR   +++R+A LE Q + A        +  +   
Sbjct: 65  ADTQGQLTEAEKQADESERARKVLENRGASDEERLASLERQYNDALERTEEAEKQYEEIS 124

Query: 473 ATCSYXXXXXXXXXXXXQS-DCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLK 649
                             + + ++ ELEEE+ +VGNNL+SLE+SE KA++RE+TYE  ++
Sbjct: 125 ERLQELENELEEAEQKADAAEARVKELEEEVTLVGNNLRSLEISEGKASEREDTYENQIR 184

Query: 650 LLDAQLK 670
            L+ +L+
Sbjct: 185 ELETKLQ 191


>SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
 Frame = +2

Query: 308 KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPR-SRTRNTKRWRATCS 484
           KL++     D  E +RK LE+     D+++  LEA+L +     + +  +  +  R    
Sbjct: 72  KLADLKDRTDTHEEVRKELEDYEMEGDEKLLDLEAKLKEVERQEKETLDKLHEAQRREVV 131

Query: 485 YXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLDAQ 664
                            KI EL+E++      +K LE +EE   +REE  E  +K LD Q
Sbjct: 132 LTKDYERAVEKGDNFYAKIDELQEKVDDTTQKIKLLEENEESNFEREEESEDKIKFLDEQ 191

Query: 665 LK 670
           +K
Sbjct: 192 VK 193


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 31/121 (25%), Positives = 51/121 (42%)
 Frame = +2

Query: 308  KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRWRATCSY 487
            K+S+      E+ER  +ALE+     D R++ LE  L  A  +  +      +WR  C+ 
Sbjct: 1272 KVSKLESDLAENERENEALEHSLECRDKRISELENSLKSAQDNHMADKNEMLQWRKRCA- 1330

Query: 488  XXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLDAQL 667
                         S  +   LE++   +   +K LE   E+A KR +  E  L   D++ 
Sbjct: 1331 -----QAEQDLQASKNQQTRLEQQKANLEQKIKHLEDDLEQANKRIDVLENALADQDSES 1385

Query: 668  K 670
            K
Sbjct: 1386 K 1386


>SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
 Frame = +2

Query: 332 ADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRN-TKRWRATCSYXXXXXXX 508
           ++ +E  RK LE      D+++  LEA+L +     +      T+  R            
Sbjct: 71  SEMNEEARKGLEESEMKGDEKIMDLEAKLKEMERVEKETLETLTEAERKEVVVTRDLERA 130

Query: 509 XXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLDAQLK 670
                  + +I  LE  +     N++ LE S ++A +REE  E  LK    QLK
Sbjct: 131 IEKGRTLENRIQSLESTMGNALTNIQKLEASGDEAYEREELKEEKLKFFQEQLK 184


>SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)
          Length = 495

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +2

Query: 536 KIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLDAQL 667
           ++ ELE  L+V G +++ L +SEEK   +E+ +   ++LL A L
Sbjct: 400 EVRELENRLKVGGRSIQQLVISEEKYCDKEDEFRHRIRLLKANL 443


>SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)
          Length = 245

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
 Frame = +2

Query: 302 TAKLSEASQAADESERIRKALENRTNMEDDRVAILE---AQLSQANSSPRSRTRNTKRWR 472
           TAK SEA    D+SE+ RKA+E +     D++A+LE   A + +       R    K  R
Sbjct: 72  TAKESEA----DDSEKDRKAMEGKEYDHSDQIALLETRCADMMRLVDEKEIRLEEAKFRR 127

Query: 473 ATCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKL 652
                            +   KI ELE+E+  +      LE   E   KR++ +E+ ++ 
Sbjct: 128 NEARAGLVEALKRGNAGEQ--KIAELEQEIERLCFEQYKLEKKGELLYKRKDYFESKIED 185

Query: 653 LDAQLK 670
           L  + +
Sbjct: 186 LQERYR 191


>SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)
          Length = 447

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
 Frame = +2

Query: 338 ESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRWRATCSYXXXXXXXXXX 517
           E ++++   E   N+E D  A L A +  ++   R+R   TK W    S           
Sbjct: 165 EEKKLKLDFEEMENLERDHFASLSAVVRDSHEKERARAERTKYWSVLGSVAGASLGIIGS 224

Query: 518 XXQSDCKIVELEEELRVVGNNL--KSLEVSEEKATKREETYETH 643
              +  ++ E++  ++  G +L  KS E+ +E  T ++ T  +H
Sbjct: 225 SIVNYIRLKEIKSSVKGTGESLMEKSNEL-KEILTAQDSTLISH 267


>SB_27455| Best HMM Match : Extensin_2 (HMM E-Value=0.75)
          Length = 159

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -1

Query: 479 KLRATSSYFLSDSSAMSSPVTVEPPRWQRD-HPPCWCGSPAPCVFARIHRRPGWPRTAW- 306
           K  +T   +  DSS         PP+W+RD  PP W    +P  + R    P W R +  
Sbjct: 37  KRESTPPQWKRDSSPPQWKRDSSPPQWKRDSSPPQWKLDSSPPQWKRDSSPPQWKRDSSP 96

Query: 305 -RWRSRDAP 282
            +W+   +P
Sbjct: 97  PQWKRDSSP 105



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -1

Query: 446 DSSAMSSPVTVEPPRWQRD-HPPCWCGSPAPCVFARIHRRPGW--PRTAWRW-RSRDAPR 279
           DSS         PP+W+RD  PP W    +P  + R    P W    T  +W R    P+
Sbjct: 93  DSSPPQWKRDSSPPQWKRDSSPPQWKQDLSPPQWKRESTPPQWKLESTPPQWKRDSSPPQ 152

Query: 278 TSRG 267
             RG
Sbjct: 153 WKRG 156


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 305 AKLSEASQAADESERIRKALENRTNME-DDRVAILEAQLSQANSSPRSRTRNTKR 466
           AKLSE    A++ E+  KALE+R+  E  + V + E++L+  N +    T+   +
Sbjct: 471 AKLSEKETLANDLEQKLKALEDRSITEKSEAVLLFESKLATLNKTIEDLTQEVSQ 525


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 341  SERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKR 466
            SER RK  +       D +A+L+A+L QAN    S T ++ R
Sbjct: 3795 SERHRKEEDEDAEETPDTMAVLQAELPQANLKAMSVTDHSSR 3836


>SB_3732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 335 RRPGWPRTAWRWRSRDAPRTSRGPPPALDTSV 240
           R PG+P T ++ R++D   T R PP  L  SV
Sbjct: 67  RAPGYPETVYKSRNKDT--TDRCPPMGLRVSV 96


>SB_49163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 485 KNKLRATSSYFLSDSSAMSSPVTVEPPRWQRDHPPCWCGSPAP 357
           KN+   TSS    DS+  S   T+E P    D PP +CG   P
Sbjct: 5   KNRANVTSSPLFPDSTDHSVYNTLEDP----DSPPQYCGLKGP 43


>SB_2494| Best HMM Match : M (HMM E-Value=0.0056)
          Length = 737

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 530 DCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLDAQ 664
           D KI    EE+  + +NLK  E  EEK    EET + H +L + +
Sbjct: 419 DSKIEGFYEEITKLQSNLKVSE--EEKRDLHEETLQAHKRLKEVE 461


>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1098

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 524 QSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLDAQLK 670
           Q   +I  +E+EL  + NNLK  E   EKA + E      L+ + ++++
Sbjct: 314 QRKSEIKSIEKELPDLKNNLKKAEADLEKAVQGEAKSSQELRSIRSKVE 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,024,720
Number of Sequences: 59808
Number of extensions: 320245
Number of successful extensions: 1235
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)