Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20940
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 105 3e-23
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 105 3e-23
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 104 7e-23
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 104 7e-23
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 104 7e-23
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 103 1e-22
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 103 1e-22
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 103 1e-22
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 103 1e-22
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 103 1e-22
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 103 1e-22
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 103 1e-22
U29244-9|AAN60507.1| 681|Caenorhabditis elegans Eps15 (endocyto... 29 3.3
U29244-8|AAC71084.1| 751|Caenorhabditis elegans Eps15 (endocyto... 29 3.3
AY027560-1|AAK13051.1| 796|Caenorhabditis elegans EHS-1 protein. 29 3.3
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 24 4.2
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 24 4.2
Z68318-6|CAA92695.2| 272|Caenorhabditis elegans Hypothetical pr... 28 5.8
AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein ( Cae... 28 5.8
AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin ... 28 5.8
AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical ... 28 7.7
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 105 bits (252), Expect = 3e-23
Identities = 60/141 (42%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Frame = +2
Query: 296 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-R 472
TAT+KL +A++AADE++R R+AL N+ +M+DDR + LE +L + S + R
Sbjct: 80 TATSKLEQATKAADEADRSRRALSNQIDMDDDRCSDLERKLRECQSILHETENKAEEVAR 139
Query: 473 ATCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKL 652
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++
Sbjct: 140 KLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRT 199
Query: 653 LDAQLKXXXXXXXXXXXSVQK 715
+ ++LK SVQK
Sbjct: 200 VSSRLKEAETRAEFAERSVQK 220
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +3
Query: 87 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRI 64
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 105 bits (252), Expect = 3e-23
Identities = 60/141 (42%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Frame = +2
Query: 296 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-R 472
TAT+KL +A++AADE++R R+AL N+ +M+DDR + LE +L + S + R
Sbjct: 80 TATSKLEQATKAADEADRSRRALSNQIDMDDDRCSDLERKLRECQSILHETENKAEEVAR 139
Query: 473 ATCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKL 652
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++
Sbjct: 140 KLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRT 199
Query: 653 LDAQLKXXXXXXXXXXXSVQK 715
+ ++LK SVQK
Sbjct: 200 VSSRLKEAETRAEFAERSVQK 220
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +3
Query: 87 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRI 64
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 104 bits (249), Expect = 7e-23
Identities = 58/141 (41%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Frame = +2
Query: 296 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-R 472
TAT+KL +A++AADE++R RK++E R+ +++R LE Q+ +A R + R
Sbjct: 80 TATSKLEQATKAADEADRARKSMETRSQQDEERANFLETQVDEAKVIAEDADRKYEEVAR 139
Query: 473 ATCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKL 652
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++
Sbjct: 140 KLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRT 199
Query: 653 LDAQLKXXXXXXXXXXXSVQK 715
+ ++LK SVQK
Sbjct: 200 VSSRLKEAETRAEFAERSVQK 220
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +3
Query: 87 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRI 64
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 104 bits (249), Expect = 7e-23
Identities = 58/141 (41%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Frame = +2
Query: 296 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-R 472
TAT+KL +A++AADE++R RK++E R+ +++R LE Q+ +A R + R
Sbjct: 80 TATSKLEQATKAADEADRARKSMETRSQQDEERANFLETQVDEAKVIAEDADRKYEEVAR 139
Query: 473 ATCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKL 652
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++
Sbjct: 140 KLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRT 199
Query: 653 LDAQLKXXXXXXXXXXXSVQK 715
+ ++LK SVQK
Sbjct: 200 VSSRLKEAETRAEFAERSVQK 220
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +3
Query: 87 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRI 64
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 104 bits (249), Expect = 7e-23
Identities = 58/141 (41%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Frame = +2
Query: 296 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-R 472
TAT+KL +A++AADE++R RK++E R+ +++R LE Q+ +A R + R
Sbjct: 80 TATSKLEQATKAADEADRARKSMETRSQQDEERANFLETQVDEAKVIAEDADRKYEEVAR 139
Query: 473 ATCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKL 652
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++
Sbjct: 140 KLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRT 199
Query: 653 LDAQLKXXXXXXXXXXXSVQK 715
+ ++LK SVQK
Sbjct: 200 VSSRLKEAETRAEFAERSVQK 220
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +3
Query: 87 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRI 64
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 103 bits (247), Expect = 1e-22
Identities = 60/140 (42%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Frame = +2
Query: 299 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-RA 475
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 476 TCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLL 655
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++ +
Sbjct: 169 LAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTV 228
Query: 656 DAQLKXXXXXXXXXXXSVQK 715
++LK SVQK
Sbjct: 229 SSRLKEAETRAEFAERSVQK 248
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 114 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRM 92
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 103 bits (247), Expect = 1e-22
Identities = 60/140 (42%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Frame = +2
Query: 299 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-RA 475
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 476 TCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLL 655
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++ +
Sbjct: 169 LAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTV 228
Query: 656 DAQLKXXXXXXXXXXXSVQK 715
++LK SVQK
Sbjct: 229 SSRLKEAETRAEFAERSVQK 248
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 114 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRM 92
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 103 bits (247), Expect = 1e-22
Identities = 60/140 (42%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Frame = +2
Query: 299 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-RA 475
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 476 TCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLL 655
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++ +
Sbjct: 169 LAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTV 228
Query: 656 DAQLKXXXXXXXXXXXSVQK 715
++LK SVQK
Sbjct: 229 SSRLKEAETRAEFAERSVQK 248
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 114 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRM 92
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 103 bits (247), Expect = 1e-22
Identities = 60/140 (42%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Frame = +2
Query: 299 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-RA 475
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 476 TCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLL 655
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++ +
Sbjct: 169 LAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTV 228
Query: 656 DAQLKXXXXXXXXXXXSVQK 715
++LK SVQK
Sbjct: 229 SSRLKEAETRAEFAERSVQK 248
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 114 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRM 92
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 103 bits (247), Expect = 1e-22
Identities = 60/140 (42%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Frame = +2
Query: 299 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-RA 475
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 476 TCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLL 655
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++ +
Sbjct: 169 LAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTV 228
Query: 656 DAQLKXXXXXXXXXXXSVQK 715
++LK SVQK
Sbjct: 229 SSRLKEAETRAEFAERSVQK 248
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 114 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRM 92
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 103 bits (247), Expect = 1e-22
Identities = 60/140 (42%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Frame = +2
Query: 299 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-RA 475
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R R
Sbjct: 18 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 77
Query: 476 TCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLL 655
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++ +
Sbjct: 78 LAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTV 137
Query: 656 DAQLKXXXXXXXXXXXSVQK 715
++LK SVQK
Sbjct: 138 SSRLKEAETRAEFAERSVQK 157
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 103 bits (247), Expect = 1e-22
Identities = 60/140 (42%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Frame = +2
Query: 299 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW-RA 475
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 476 TCSYXXXXXXXXXXXXQSDCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLL 655
+ KIVELEEELRVVGNNLKSLEVSEEKA +RE++YE ++ +
Sbjct: 169 LAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTV 228
Query: 656 DAQLKXXXXXXXXXXXSVQK 715
++LK SVQK
Sbjct: 229 SSRLKEAETRAEFAERSVQK 248
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 114 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRM 92
>U29244-9|AAN60507.1| 681|Caenorhabditis elegans Eps15 (endocytosis
protein) homologoussequence protein 1, isoform b
protein.
Length = 681
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 539 IVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLDAQLK 670
I L+ EL + + +K LE + +AT+R Y+T ++ L++ K
Sbjct: 456 IKNLQVELATLESTVKQLERQKGEATRRLADYDTQIEQLESACK 499
>U29244-8|AAC71084.1| 751|Caenorhabditis elegans Eps15 (endocytosis
protein) homologoussequence protein 1, isoform a
protein.
Length = 751
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 539 IVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLDAQLK 670
I L+ EL + + +K LE + +AT+R Y+T ++ L++ K
Sbjct: 456 IKNLQVELATLESTVKQLERQKGEATRRLADYDTQIEQLESACK 499
>AY027560-1|AAK13051.1| 796|Caenorhabditis elegans EHS-1 protein.
Length = 796
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 539 IVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLDAQLK 670
I L+ EL + + +K LE + +AT+R Y+T ++ L++ K
Sbjct: 501 IKNLQVELATLESTVKQLERQKGEATRRLADYDTQIEQLESACK 544
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 23.8 bits (49), Expect(2) = 4.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 374 CGSPAPCVFARIHRRPGWPRTA 309
CG PAPC A I G TA
Sbjct: 67 CGGPAPCAAAPIAAPAGGYATA 88
Score = 23.4 bits (48), Expect(2) = 4.2
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 386 PPCWCGSPA 360
PPC CG+PA
Sbjct: 36 PPCGCGAPA 44
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 23.8 bits (49), Expect(2) = 4.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 374 CGSPAPCVFARIHRRPGWPRTA 309
CG PAPC A I G TA
Sbjct: 67 CGGPAPCAAAPIAAPAGGYATA 88
Score = 23.4 bits (48), Expect(2) = 4.2
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 386 PPCWCGSPA 360
PPC CG+PA
Sbjct: 36 PPCGCGAPA 44
>Z68318-6|CAA92695.2| 272|Caenorhabditis elegans Hypothetical
protein T21B10.5 protein.
Length = 272
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 409 GSTVTGELIAEESDKKYEEVARNLFLW 489
GS+ E + E+ KY++ A+N F+W
Sbjct: 246 GSSYGNEFVESENGNKYKKPAKNPFIW 272
>AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein (
Caenorhabditis elegansmRNA for dystrobrevin. ).
Length = 590
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 250 SNAGGGPREVRGASRDRHRQAVRGQP 327
SN GGGPRE A H +A+ P
Sbjct: 4 SNGGGGPREPSSAPSPDHHRAMHSVP 29
>AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin
homolog protein 1 protein.
Length = 590
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 250 SNAGGGPREVRGASRDRHRQAVRGQP 327
SN GGGPRE A H +A+ P
Sbjct: 4 SNGGGGPREPSSAPSPDHHRAMHSVP 29
>AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical
protein Y105E8B.1f protein.
Length = 151
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 114 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 251
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRM 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,047,833
Number of Sequences: 27780
Number of extensions: 239122
Number of successful extensions: 1065
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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