Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20940
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 174 YHKRLQVEIMRRE 212
           YHK LQ+E++R E
Sbjct: 156 YHKELQIELVREE 168


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 639 LILNYWTPNSKRLKH 683
           L LN W P   RL+H
Sbjct: 127 LYLNIWVPQKYRLRH 141


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 639 LILNYWTPNSKRLKH 683
           L LN W P   RL+H
Sbjct: 127 LYLNIWVPQKYRLRH 141


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 317 RTAWRWRSRDAPRTSRGPPPALDTSV 240
           R  W+ RSRD     R   P + +S+
Sbjct: 60  RETWKERSRDRTERERSREPKIISSL 85


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 317 RTAWRWRSRDAPRTSRGPPPALDTSV 240
           R  W+ RSRD     R   P + +S+
Sbjct: 60  RETWKERSRDRTERERSREPKIISSL 85


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 317 RTAWRWRSRDAPRTSRGPPPALDTSV 240
           R  W+ RSRD     R   P + +S+
Sbjct: 60  RETWKERSRDRTERERSREPKIISSL 85


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 317 RTAWRWRSRDAPRTSRGPPPALDTSV 240
           R  W+ RSRD     R   P + +S+
Sbjct: 60  RETWKERSRDRTERERSREPKIISSL 85


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -2

Query: 97  VPCCMFVVI 71
           +PCCM V++
Sbjct: 250 IPCCMLVIV 258


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -2

Query: 97  VPCCMFVVI 71
           +PCCM V++
Sbjct: 250 IPCCMLVIV 258


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 293 RDAPRTSRGPPPALDTS 243
           R +P +SR P P+L TS
Sbjct: 35  RRSPSSSRSPSPSLLTS 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,674
Number of Sequences: 438
Number of extensions: 2657
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)