Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20940
(716 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07190.1 68416.m00857 expressed protein 33 0.19
At1g79830.1 68414.m09326 expressed protein weak similarity to TA... 31 0.58
At5g62460.1 68418.m07838 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative St... 28 5.4
At5g56210.1 68418.m07014 expressed protein ; expression supporte... 28 7.1
At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide... 28 7.1
At5g43760.1 68418.m05352 beta-ketoacyl-CoA synthase, putative si... 27 9.4
At5g15770.1 68418.m01844 GCN5-related N-acetyltransferase (GNAT)... 27 9.4
At3g63070.1 68416.m07084 PWWP domain-containing protein putative... 27 9.4
At2g31690.1 68415.m03868 lipase class 3 family protein similar t... 27 9.4
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD... 27 9.4
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 27 9.4
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 27 9.4
>At3g07190.1 68416.m00857 expressed protein
Length = 220
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 536 KIVELEEELRVVGNNLKSLE-VSEEKATKREETYETHLKLLDAQ 664
+I +L+E+L V NLK LE S+EK TK ET E H+ L Q
Sbjct: 149 EIKQLKEKLSCVSENLKKLEKESKEKETKL-ETAEAHVTALQKQ 191
>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
element modulatory factor (TMF) (Swiss-Prot:P82094)
[Homo sapiens]
Length = 927
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 296 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLS--QANSSPRSRTRNTKRW 469
T ++L EA A +E +++ R + R+ +LEAQLS +A S++ +R
Sbjct: 647 TLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQ 706
Query: 470 RA 475
RA
Sbjct: 707 RA 708
>At5g62460.1 68418.m07838 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 307
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 296 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRW 469
T + +E DE E + +++E R E+D V LE+ S + S + + +RW
Sbjct: 54 TEEEETTEQRDVDDEEEPLIQSVECRICQEEDSVKNLESPCSCSGSLKYAHRKCVQRW 111
>At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative
Strong similarity to beta-keto-Coa synthase gb|U37088
from Simmondsia chinensis, GI:4091810
Length = 528
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 231 PLRTQLLLFA*FPLATVCGTPRTRPYIFPFPLSFDAF 121
P+ QLL FA V + +PYI F L+F+ F
Sbjct: 372 PMSEQLLFFATLVARKVFNVKKIKPYIPDFKLAFEHF 408
>At5g56210.1 68418.m07014 expressed protein ; expression supported
by MPSS
Length = 509
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = +2
Query: 530 DCKIVELEEELRVVGNNLKSLEVSEEKATKREETYETHLKLLDAQL 667
+ ++ L+ E+ + NN++ LE+ E+A + E ET ++ L++ +
Sbjct: 340 EMELTSLDSEILNLVNNVEHLEIKLEEAKRILEVKETQIRELESTI 385
>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
identical to fibrillarin 1 GI:9965653 from [Arabidopsis
thaliana]; C-terminus identical to SKP1 interacting
partner 7 GI:10716959 from [Arabidopsis thaliana];
contains Pfam domain PF01269: Fibrillarin
Length = 308
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 259 GGGPREVRGAS--RDRHRQAVRGQ--PGRR*IRANTQGAGEPHQHGG 387
GGG RG S R R R A RG+ P R ++ ++ EPH+H G
Sbjct: 32 GGGRSGDRGRSGPRGRGRGAPRGRGGPPRGGMKGGSKVIVEPHRHAG 78
>At5g43760.1 68418.m05352 beta-ketoacyl-CoA synthase, putative
similar to beta-ketoacyl-CoA synthase [Simmondsia
chinensis][GI:1045614]
Length = 529
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 231 PLRTQLLLFA*FPLATVCGTPRTRPYIFPFPLSFDAF 121
P+ QLL FA V + +PYI F L+F+ F
Sbjct: 380 PMSEQLLFFATLVARKVFKVKKIKPYIPDFKLAFEHF 416
>At5g15770.1 68418.m01844 GCN5-related N-acetyltransferase (GNAT)
family protein similar to SP|O93806
Glucosamine-phosphate N-acetyltransferase (EC 2.3.1.4)
(Phosphoglucosamine transacetylase) (Phosphoglucosamine
acetylase) {Candida albicans}; contains Pfam profile
PF00583: acetyltransferase, GNAT family
Length = 149
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 403 LGGSTVTGELIAEESDKKYEEV 468
LG TVTG + EE D+++EE+
Sbjct: 23 LGQLTVTGSVTDEEFDRRFEEI 44
>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
transcription factor HUA2, Arabidopsis thaliana,
EMBL:AF116556
Length = 1347
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -1
Query: 410 PPRWQRDHPPCWCGSPAPCVFARIHRRPGWPR-TAWRWRSRDAPRTSRGPPP 258
PPR +PP GSP P +R+ PR ++ R P + PPP
Sbjct: 1167 PPRM---NPPMHYGSPEPSYSSRVSLSKSMPRGEGSNFQHRPYPSSHPPPPP 1215
>At2g31690.1 68415.m03868 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile PF01764: Lipase
Length = 484
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 449 SDSSAMSSPVTVEPPRWQRDHPPCWCGSPAPC 354
S SS++ +PV + P PP +C PC
Sbjct: 48 SSSSSLLAPVILNSPVASSSPPPIYCAPKFPC 79
>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
glucosyltransferase, putative similar to sucrose synthase
GI:6682841 from [Citrus unshiu]
Length = 942
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 308 KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQANSSPRSRTRNTKRWRATCSY 487
++ E AAD SER++K LE ++ E ++ ++ Q +S S RN C Y
Sbjct: 867 EVREGLLAADASERVKKVLE--SSEEKQKLEKMKIAYGQQHSQGASPVRNLFWSVVVCLY 924
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -1
Query: 410 PPRWQRDHPPCWCGSPA-PCVFARIHRRPGWP 318
PP + R PPC PA P R RRP +P
Sbjct: 5 PPHFSRAKPPCRLSDPAQPHKLCR-RRRPSYP 35
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 533 CKIVELEEELRVVGNNLKSLEVSE 604
CK+++L + +R++ NNL + E E
Sbjct: 1374 CKVLKLTKNMRLLANNLSATEAKE 1397
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,399,116
Number of Sequences: 28952
Number of extensions: 224572
Number of successful extensions: 754
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -