Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20939
         (500 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P48810 Cluster: Heterogeneous nuclear ribonucleoprotein...    45   8e-04
UniRef50_UPI00005A10B6 Cluster: PREDICTED: similar to Heterogene...    35   1.2  
UniRef50_P09651 Cluster: Heterogeneous nuclear ribonucleoprotein...    35   1.2  
UniRef50_Q5TTQ2 Cluster: ENSANGP00000026814; n=3; Endopterygota|...    32   8.3  
UniRef50_Q02926 Cluster: Ribonucleoprotein RB97D; n=7; Sophophor...    32   8.3  

>UniRef50_P48810 Cluster: Heterogeneous nuclear ribonucleoprotein
           87F; n=16; Coelomata|Rep: Heterogeneous nuclear
           ribonucleoprotein 87F - Drosophila melanogaster (Fruit
           fly)
          Length = 385

 Score = 45.2 bits (102), Expect = 8e-04
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +3

Query: 12  FGNYNQQSYSGGPTRNQAYGNNRSTPYN 95
           FGN  QQSY GGP RN  +GNNR  PY+
Sbjct: 316 FGNEYQQSYGGGPQRNSNFGNNRPAPYS 343


>UniRef50_UPI00005A10B6 Cluster: PREDICTED: similar to Heterogeneous
           nuclear ribonucleoprotein A1 (Helix-destabilizing
           protein) (Single-strand binding protein) (hnRNP core
           protein A1) (HDP-1) (Topoisomerase-inhibitor
           suppressed); n=4; Eutheria|Rep: PREDICTED: similar to
           Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed) - Canis familiaris
          Length = 407

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 9   DFGNYNQQSYSGGPTRNQAYGNNRSTPY 92
           DFGNYN QS + GP +   +G   S PY
Sbjct: 349 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 376


>UniRef50_P09651 Cluster: Heterogeneous nuclear ribonucleoprotein
           A1; n=390; Euteleostomi|Rep: Heterogeneous nuclear
           ribonucleoprotein A1 - Homo sapiens (Human)
          Length = 372

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 9   DFGNYNQQSYSGGPTRNQAYGNNRSTPY 92
           DFGNYN QS + GP +   +G   S PY
Sbjct: 314 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 341


>UniRef50_Q5TTQ2 Cluster: ENSANGP00000026814; n=3;
           Endopterygota|Rep: ENSANGP00000026814 - Anopheles
           gambiae str. PEST
          Length = 358

 Score = 31.9 bits (69), Expect = 8.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 9   DFGNYNQQSYSGGPTRNQAYGNNRSTPY 92
           +FGN  QQ Y+ GP R     N R+ PY
Sbjct: 323 EFGNNYQQGYNAGPVRAGGNFNQRAAPY 350


>UniRef50_Q02926 Cluster: Ribonucleoprotein RB97D; n=7;
           Sophophora|Rep: Ribonucleoprotein RB97D - Drosophila
           melanogaster (Fruit fly)
          Length = 471

 Score = 31.9 bits (69), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 9   DFGNYNQQSYSGGPTRNQAYGNNRSTPYN 95
           +FG   QQ+Y GGP+++     NR  PY+
Sbjct: 386 NFGTGYQQNYGGGPSKHNNMNANRMNPYS 414


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 389,676,399
Number of Sequences: 1657284
Number of extensions: 5770735
Number of successful extensions: 10058
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10053
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)