Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20939
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    31   0.097
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   4.8  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   6.4  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 31.1 bits (67), Expect = 0.097
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   NQDFGNYNQQSYSGGPTRNQAYGNNRSTPYN 95
           N   GN N+Q+Y+     NQ YGNN +  YN
Sbjct: 602 NSSSGNSNKQNYNN--NNNQNYGNNNNQNYN 630



 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 6   QDFGNYNQQSYSGGPTRNQAYGNNRST 86
           Q++ N N Q+Y  G   NQ Y NN ++
Sbjct: 611 QNYNNNNNQNY--GNNNNQNYNNNNNS 635



 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 3   NQDFGNYNQQSYSGGPTRNQAYGNNR 80
           NQ++GN N Q+Y+     +Q  GN++
Sbjct: 618 NQNYGNNNNQNYNNNNNSSQG-GNSQ 642


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 89  WSRPIIPICLISSWTPAI 36
           +S P  P+C I  WTP I
Sbjct: 105 FSYPENPLCFIKQWTPVI 122


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 417 STSVPTTLNT---QKTLQFSSHKY*NSSKYELRAHLMSNNPE 301
           STS   T+++   +KT+ FS  K  N +  +  A ++  NPE
Sbjct: 169 STSAAATIDSNIDEKTVAFSEEKRFNFASTDCAAAVIKTNPE 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,057
Number of Sequences: 5004
Number of extensions: 25762
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)