Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20939
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   1.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.5  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 18  NYNQQSYSGGPTRNQAYGNNRSTPYNM 98
           NYN  +Y+     N  Y N +   YN+
Sbjct: 95  NYNNNNYNNYNYNNNNYNNYKKLYYNI 121


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +3

Query: 3   NQDFGNYNQQSYSGGPTRNQAYGNNRSTPY 92
           N  + NYN  + +     N  Y NN    Y
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLY 117


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +3

Query: 3   NQDFGNYNQQSYSGGPTRNQAYGNNRSTPY 92
           N  + NYN  + +     N  Y NN    Y
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLY 117


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
          precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 19 IIISRVIAGVQLEIKHMGII 78
          I I  ++ GVQ E+K + +I
Sbjct: 4  IAILAMVVGVQAELKQINVI 23


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 18  NYNQQSYSGGPTRNQAYGNNRSTPYNM 98
           NYN  +Y+     N    N +   YN+
Sbjct: 332 NYNNNNYNNNNYNNNYNNNCKKLYYNI 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,698
Number of Sequences: 438
Number of extensions: 1830
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)