Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20939
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    31   0.58 
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    31   0.58 
At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containi...    28   3.1  
At5g02190.1 68418.m00140 aspartyl protease family protein contai...    27   5.4  
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha...    27   9.4  

>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 15  GNYNQQSYSGGPTRNQAYGNNRSTPY 92
           G+  + +YS GP RN  +G NRS PY
Sbjct: 398 GDRRRDNYSSGPDRNH-HGGNRSRPY 422


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 15  GNYNQQSYSGGPTRNQAYGNNRSTPY 92
           G+  + +YS GP RN  +G NRS PY
Sbjct: 398 GDRRRDNYSSGPDRNH-HGGNRSRPY 422


>At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 731

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 269 SWSTRXTS*KPSGLLDIR*ALSSYLEEFQYLCELNCKVFCVFNVV 403
           SW++  TS   +G LD   +L S LEE  ++C +   V    +V+
Sbjct: 362 SWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVI 406


>At5g02190.1 68418.m00140 aspartyl protease family protein contains
           Pfam profile PF00026: Eukaryotic aspartyl protease
          Length = 453

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 477 YFLIKLINFTWLIP*NY---VTISTSVPTTLNTQKTLQFSSHK 358
           + L+   NFTWL P NY   + IST +P       T+Q +  K
Sbjct: 236 FLLLGDSNFTWLTPLNYTPLIRISTPLPYFDRVAYTVQLTGIK 278


>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
            putative contains Pfam PF00400: WD domain, G-beta repeat;
            similar to Coatomer alpha subunit (Alpha-coat protein)
            (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621) [Homo sapiens]
          Length = 1218

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 1    EIKTLAIIISRVIAGVQLEIK 63
            E+K L II+   + G+QLE+K
Sbjct: 1046 EVKELVIIVKEYVLGLQLELK 1066


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,371,129
Number of Sequences: 28952
Number of extensions: 126256
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)