Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20938
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7) 31 1.1
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014) 29 3.4
SB_48596| Best HMM Match : Filament (HMM E-Value=0.23) 29 3.4
SB_1285| Best HMM Match : SET (HMM E-Value=0.011) 29 3.4
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09) 29 3.4
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
>SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)
Length = 149
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +3
Query: 48 RTSIPDKVPEAEDKPLNVVDNLSSEQELIDQ-ANTIKDIDNSLRANKKEVIDIPVKVIVE 224
+ SIP P+ + K LN V+N++ +E ++ A+ + D+ N + + K E V V+
Sbjct: 72 KDSIPLAKPQKQQKVLNAVENINWPEEKKERFADVLNDVHN-ISSEKSEEEGDGVVFFVK 130
Query: 225 EIKPSLKSDLKTLK 266
+K + +++L+ LK
Sbjct: 131 SLKWA-RNELRILK 143
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/84 (26%), Positives = 45/84 (53%)
Frame = +3
Query: 33 RARRTRTSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVK 212
R R+ + +KV E+ D + ++N EL +Q IK+ + L+ +KE+ + K
Sbjct: 593 RDRQIQNLSLEKVNESRDDEITELEN-----ELEEQREIIKENEEKLKEKEKEIEKLKKK 647
Query: 213 VIVEEIKPSLKSDLKTLKCRMKMR 284
+I E+ LK D++T + +++ +
Sbjct: 648 II--ELSDKLK-DMETSRNKVETK 668
>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 317 PGPPQHQEHETQNPEHHEDAEKIVSSVKN---DINTAEIALRQGFQEVSDGIGKWYARTE 487
P PP H + E H E E+I S K+ D+ A+ L++ +++ + +G Y R
Sbjct: 282 PNPPPHLDEEKIKQLHEELKEEIKSMAKDSEKDLEDAKKDLKEEIEQIKEEVG--YLRYM 339
Query: 488 QINEL 502
+ +L
Sbjct: 340 EAKQL 344
>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
Length = 510
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = +2
Query: 263 EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 442
+V ++ I+ LR+ H ++ + HH +KI S + + GF
Sbjct: 49 DVSSGSDSIENEKFTLRDDHTDNHHQNHHDHHHHHHHDKKIDSKTSIATVAWMVIVSDGF 108
Query: 443 QEVSDGI 463
+SDG+
Sbjct: 109 HNLSDGL 115
>SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)
Length = 458
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +3
Query: 36 ARRTRTSIPDKVPEAEDKPLNVVDNL--SSEQELIDQANTIKDIDNSLRANKKEVIDIPV 209
A R+R D +A L + + SS ++LID I+D ++S +KE + +
Sbjct: 124 AMRSRGDTTDAEIKALKTQLKMAEETRDSSRRDLIDAHRKIRDAEDSKETLRKENLHVKR 183
Query: 210 KV-IVEEIKPSLKSDLKTLKCRMKM 281
+V +E K SL+ + L+ ++K+
Sbjct: 184 QVKDLEMEKQSLEKSVSDLREKVKL 208
>SB_1285| Best HMM Match : SET (HMM E-Value=0.011)
Length = 829
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 254 KNVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAE-KIVSSVKNDI 409
K V + EE+ R LV L GPP + T+ P E ++S VK ++
Sbjct: 554 KKYSVAEFREELVRQLVGLEEFGPPPAHKPPTRAPNQFETVHMPMMSDVKRNL 606
>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
Length = 416
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +3
Query: 144 NTIKDIDNS--LRANKKEVIDIPVKVIVEEIKPSLKSDLKTLKCRMKMRKSRGL*SI*EI 317
N +K + +S +++ K + D+PV +EE D ++ K RGL ++ +
Sbjct: 315 NFMKQMKHSQEVKSRKDTLCDLPVSSSMEEKIAKSGMDFNKMRSVYKEGGERGLLTVLAL 374
Query: 318 PGPRS---IKSTKHRILNTTKMLKK 383
P S +K +K R+ T +++ K
Sbjct: 375 PPQYSQLNVKGSKPRVTKTIRIINK 399
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = +2
Query: 260 VEVPDENEEIKRPLVDLRNPGPPQHQEHETQN---PEHHEDAEKI--VSSVKNDINTAEI 424
+ PDE E + + DL NP + E E Q+ + +D EKI V S N + I
Sbjct: 828 INSPDEREIVLSEIYDLDNPSDDEELETEIQDALETANEQDKEKILAVYSALRSPNLSGI 887
Query: 425 ALRQ 436
L Q
Sbjct: 888 ELAQ 891
>SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 KNVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAE-KIVSSVKND 406
K V + EE+ R LV L GPP + T+ P E ++S VK +
Sbjct: 554 KKYSVAEFREELVRQLVGLEEFGPPPAHKPPTRAPNQFETVHMPMMSDVKRN 605
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,148,075
Number of Sequences: 59808
Number of extensions: 345543
Number of successful extensions: 1299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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