Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20937
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...   105   8e-24
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    85   7e-18
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    33   0.054
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    27   2.0  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   6.2  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    26   6.2  

>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score =  105 bits (251), Expect = 8e-24
 Identities = 45/61 (73%), Positives = 56/61 (91%)
 Frame = +3

Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
           HSYSRA+VKFNV+R DNMIIQ+IA+LDQLDKD+NTF+MR++EWYS+HFPEL  IV +N+ 
Sbjct: 152 HSYSRAKVKFNVNRNDNMIIQAIAILDQLDKDINTFAMRMKEWYSWHFPELSKIVGDNYK 211

Query: 690 Y 692
           Y
Sbjct: 212 Y 212



 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 VSEGILTEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAI-SEALEIQCTHTGAVPEILR 432
           +SEG+L + L  FLE  LPK  K+ K +LGV D  L  +I SE   I+C  +    ++LR
Sbjct: 66  ISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDLLR 125

Query: 433 GIRYHFHSLIKGLTLKACSVAQLGL 507
           GIR+H   L+K L+      AQLGL
Sbjct: 126 GIRFHGDKLLKQLSPGDFERAQLGL 150


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 85.4 bits (202), Expect = 7e-18
 Identities = 34/63 (53%), Positives = 50/63 (79%)
 Frame = +3

Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
           HS SR ++KF+  +VD MI+Q+IALLD LDK++NT++MR+REWY +HFPE+  I+ +N  
Sbjct: 145 HSLSRHKLKFSPDKVDTMIVQAIALLDDLDKELNTYAMRVREWYGWHFPEMGKIIQDNLA 204

Query: 690 YTK 698
           Y +
Sbjct: 205 YAR 207



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +1

Query: 262 EGILTEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISE--ALEIQCTHTGAVPEILRG 435
           EG ++  L+  LEG L   K     TL V DPKLG AI++   LE +     +V ++ RG
Sbjct: 64  EGKVSSKLSSLLEG-LSDSKSS---TLVVADPKLGNAINKLPGLEFEIISDSSVQDLYRG 119

Query: 436 IRYHFHSLIKGLTLKACSVAQLGLA 510
           IR H  SLI GL     +   LGL+
Sbjct: 120 IREHLSSLISGLAPSDLNAMSLGLS 144


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 558 NMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 698
           ++I+ S ++  ++D ++      ++EWY   FPEL S+V     Y K
Sbjct: 118 HLIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCK 164


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 86  HSAGFALFRVAEFEEL---AAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIV 235
           HS G + FR+ + EEL   +   P+V +     Q + A   L+ F   K  IV
Sbjct: 138 HSVGVSNFRIPDLEELLKTSTITPRVNQIEFHPQVYKAAKPLVEFCQSKGIIV 190


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/74 (22%), Positives = 37/74 (50%)
 Frame = +2

Query: 395 SARIQEQSRRF*EAYVITSTRSSKVLPSKRAVWHSLALPLILTSSCQVQCSPSGQHDHTI 574
           SA +++  +R   + V+    SS  + + + ++HS+ + +IL     +  +      + I
Sbjct: 517 SAELKKLHKRSLSSKVLEEAFSSYWMSALKEMYHSIKVSMILQPDRYLDMNFDFNDTNKI 576

Query: 575 NSPARST*QRR*HF 616
           N+P+ +  Q R HF
Sbjct: 577 NNPSSTANQTR-HF 589


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 221 CVVEKLLKSQQH*NVANLSRTLRPEAGKPLTL 126
           CV+   L+ ++H ++  L   + PEAGK + L
Sbjct: 44  CVILGTLEFRKHRSIRRLQSMIVPEAGKSIQL 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,993
Number of Sequences: 5004
Number of extensions: 61457
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)