Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20937
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 114 6e-26
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 97 2e-20
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 88 6e-18
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 88 6e-18
04_01_0275 + 3648866-3649951 29 4.9
12_02_1165 + 26633371-26633679,26635183-26635276,26635732-266358... 28 6.4
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 28 6.4
07_01_0103 - 779554-780434,780542-780791 28 8.5
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 114 bits (275), Expect = 6e-26
Identities = 48/69 (69%), Positives = 62/69 (89%)
Frame = +3
Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
HSYSRA+VKFNV+RVDNM+IQ+I LLD LDKD+N+FSMR+REW+ +HFPELV IV +N++
Sbjct: 153 HSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWFGWHFPELVKIVNDNYI 212
Query: 690 YTKCAEFIK 716
Y K A++IK
Sbjct: 213 YAKLADYIK 221
Score = 76.6 bits (180), Expect = 2e-14
Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 VSEGILTEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEIL 429
+SEGI+T++L FLE LPK K K++K +LGV++PK+G+ ISE I C V E+L
Sbjct: 66 ISEGIMTDELRSFLELNLPKPKEGKKAKYSLGVVEPKVGSHISEVTGIPCQSNEFVQELL 125
Query: 430 RGIRYHFHSLIKGLTLKACSVAQLGL 507
RG+R HF I L AQLGL
Sbjct: 126 RGVRLHFDRFISELKKSDLEKAQLGL 151
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 96.7 bits (230), Expect = 2e-20
Identities = 49/88 (55%), Positives = 63/88 (71%), Gaps = 20/88 (22%)
Frame = +3
Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRI-------------------- 629
HSYSRA+VKFNV+RVDNM+IQ+I LLD LDKD+N+FSMR+
Sbjct: 191 HSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVSLFFPLFYAMINSGGESLPP 250
Query: 630 REWYSYHFPELVSIVPENHLYTKCAEFI 713
REWYS+HFPELV IV +N++Y+K A+F+
Sbjct: 251 REWYSWHFPELVKIVNDNYVYSKIAKFV 278
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +1
Query: 256 VSEGILTEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEIL 429
+SEGI+T++L FLE LPK K K++K ++GV++PK+G+ ISEA I C V E+L
Sbjct: 66 ISEGIMTDELRSFLELNLPKVKEGKKAKYSVGVMEPKVGSHISEATGIPCQCNEFVQELL 125
Query: 430 RGIRYHFHSLIKGL 471
RG+R HF I L
Sbjct: 126 RGVRLHFDHFIDQL 139
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +2
Query: 71 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 250
Y+LFE ++G+ALF +E+ + SV +LQRF+ V L F P SA+ AL
Sbjct: 4 YLLFESASGYALFHAHGVDEIGQGVDAARASVLELQRFSKAVKLAGFSPFSSAVDALNQC 63
Query: 251 N 253
N
Sbjct: 64 N 64
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 88.2 bits (209), Expect = 6e-18
Identities = 37/68 (54%), Positives = 51/68 (75%)
Frame = +3
Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
HS SR ++KF+ +VD MIIQ+I LLD LDK++NT++MR+REWY +HFPEL IV +N
Sbjct: 142 HSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIQ 201
Query: 690 YTKCAEFI 713
Y K + +
Sbjct: 202 YAKVVKMM 209
Score = 54.4 bits (125), Expect = 9e-08
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Frame = +1
Query: 232 RCFGKYQRVSEGILTEDLNLFLEGGLPKRKKRSK-C---TLGVLDPKLGAAISEALEIQC 399
+ F K++ S+ + L + + RK K C TL V D KLG AI E L+I C
Sbjct: 45 KAFNKFENTSDALSAATLIIDSKPTKGLRKFLQKHCEGETLAVADSKLGNAIKEKLKIDC 104
Query: 400 THTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLA 510
H AV E++RG+R LI GL + LGL+
Sbjct: 105 LHNSAVMELMRGLRNQLTELISGLGAQDLGPMSLGLS 141
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 88.2 bits (209), Expect = 6e-18
Identities = 37/68 (54%), Positives = 51/68 (75%)
Frame = +3
Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
HS SR ++KF+ +VD MIIQ+I LLD LDK++NT++MR+REWY +HFPEL IV +N
Sbjct: 142 HSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIQ 201
Query: 690 YTKCAEFI 713
Y K + +
Sbjct: 202 YAKVVKMM 209
Score = 54.4 bits (125), Expect = 9e-08
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Frame = +1
Query: 232 RCFGKYQRVSEGILTEDLNLFLEGGLPKRKKRSK-C---TLGVLDPKLGAAISEALEIQC 399
+ F K++ S+ + L + + RK K C TL V D KLG AI E L+I C
Sbjct: 45 KAFNKFENTSDALSAATLIIDSKPTKGLRKFLQKHCEGETLAVADSKLGNAIKEKLKIDC 104
Query: 400 THTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLA 510
H AV E++RG+R LI GL + LGL+
Sbjct: 105 LHNSAVMELMRGLRNQLTELISGLGAQDLGPMSLGLS 141
>04_01_0275 + 3648866-3649951
Length = 361
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 113 VAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSA-----IVALENINGYLKVFLL 277
V E +E AFLP+ +ESV L V + +P ++A + A++ ++ Y+ VFL+
Sbjct: 95 VRELDEALAFLPEFQESVLILHIATNVFYGLCIEPDQNAASFKQLEAIKTLSDYM-VFLV 153
Query: 278 RI 283
+
Sbjct: 154 AV 155
>12_02_1165 +
26633371-26633679,26635183-26635276,26635732-26635822,
26636112-26636199,26636300-26636341,26636648-26636809,
26636915-26637094,26637280-26637447,26637977-26638195
Length = 450
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 74 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAF 211
+LFE +GFA+FRV++ L + + S TD + VV I F
Sbjct: 172 MLFETPSGFAMFRVSDV--LFRYPEDIWSSFTDPHTAHQVVRTIGF 215
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +1
Query: 280 DLNLFLEGGLPKRKKR-SKCTLGVLDP--KLGAAISEALEIQCTHTGAVPEILRGIRYHF 450
DL L + GL +++ R S+CT +LDP G + L I G + R ++ H
Sbjct: 594 DLGLIDQEGLCRKESRISRCTSSLLDPLEVYGREDEKKLIISSLLDGCLTFKKRRLKEHE 653
Query: 451 HSLIKGLTLKACSVAQLG 504
+ K ++ S+ +G
Sbjct: 654 YETCKAGAVRLISIVAMG 671
>07_01_0103 - 779554-780434,780542-780791
Length = 376
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 325 RSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTL 477
+S GV + AA+ EA + G + I RG+R HFH I + +
Sbjct: 285 KSSTRRGVAARLVQAALGEAARKREVRRGDLRRIERGVRRHFHDDITAVVV 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,007,348
Number of Sequences: 37544
Number of extensions: 399493
Number of successful extensions: 997
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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