BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20937 (717 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33) 130 1e-30 SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14 SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3) 29 3.8 SB_34695| Best HMM Match : CXC (HMM E-Value=4.7) 28 8.7 >SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33) Length = 300 Score = 130 bits (314), Expect = 1e-30 Identities = 57/69 (82%), Positives = 65/69 (94%) Frame = +3 Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689 HSYSRA+VKFN+HRVDNMIIQSIALLDQLDKD+NTFSMRIREWYSYHFPELV IV +N++ Sbjct: 84 HSYSRAKVKFNIHRVDNMIIQSIALLDQLDKDINTFSMRIREWYSYHFPELVKIVNDNYM 143 Query: 690 YTKCAEFIK 716 Y K A++IK Sbjct: 144 YAKVAKYIK 152 Score = 86.6 bits (205), Expect = 2e-17 Identities = 43/80 (53%), Positives = 53/80 (66%) Frame = +1 Query: 268 ILTEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYH 447 I+ +DL F+E +P KK+SK LGV D K+GAAI E+L I C G + E+LRGIR H Sbjct: 3 IIHDDLKAFVEANVPTGKKKSKVLLGVADSKIGAAIQESLNICCDSGGVILEVLRGIRMH 62 Query: 448 FHSLIKGLTLKACSVAQLGL 507 F +IKGLT S AQLGL Sbjct: 63 FDKMIKGLTGAMASKAQLGL 82 >SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 424 Score = 77.4 bits (182), Expect = 1e-14 Identities = 33/60 (55%), Positives = 45/60 (75%) Frame = +3 Query: 519 SRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 698 SR ++KF+ +VD MI+Q+I+LLD LDK++N + MR REWY +HFPEL IV +N Y K Sbjct: 58 SRYKLKFSPDKVDTMIVQAISLLDDLDKELNNYVMRCREWYGWHFPELGKIVTDNLAYAK 117 >SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3) Length = 1259 Score = 29.1 bits (62), Expect = 3.8 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Frame = +3 Query: 480 SVQCGTAWPCHSYSRA-RVKFNVH 548 +V CGT WPC RA R++ +H Sbjct: 1090 AVYCGTCWPCIKLVRALRMRIRIH 1113 >SB_34695| Best HMM Match : CXC (HMM E-Value=4.7) Length = 186 Score = 27.9 bits (59), Expect = 8.7 Identities = 21/89 (23%), Positives = 34/89 (38%) Frame = +3 Query: 279 GFESIPRRGSSKKEETVKMHTRCTGSQARSSHQRGLGNSVHAYRSSPGDFERHTLSLPLA 458 GF+ +P R SK K+H +A + R HA S G+ HT S Sbjct: 107 GFDRVPSRRQSKDSAPAKVHAE---GEAPAPSPR-----THAAHSMSGEKGDHTPSRRGC 158 Query: 459 HQRSYPQSVQCGTAWPCHSYSRARVKFNV 545 +P+ + C C ++ R + + Sbjct: 159 RHSRWPRRITCSD--DCFAFDEPRTRLRL 185 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,416,660 Number of Sequences: 59808 Number of extensions: 477088 Number of successful extensions: 1235 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1235 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1901817086 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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