Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20937
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                130   1e-30
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   1e-14
SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)                  29   3.8  
SB_34695| Best HMM Match : CXC (HMM E-Value=4.7)                       28   8.7  

>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score =  130 bits (314), Expect = 1e-30
 Identities = 57/69 (82%), Positives = 65/69 (94%)
 Frame = +3

Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
           HSYSRA+VKFN+HRVDNMIIQSIALLDQLDKD+NTFSMRIREWYSYHFPELV IV +N++
Sbjct: 84  HSYSRAKVKFNIHRVDNMIIQSIALLDQLDKDINTFSMRIREWYSYHFPELVKIVNDNYM 143

Query: 690 YTKCAEFIK 716
           Y K A++IK
Sbjct: 144 YAKVAKYIK 152



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 43/80 (53%), Positives = 53/80 (66%)
 Frame = +1

Query: 268 ILTEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYH 447
           I+ +DL  F+E  +P  KK+SK  LGV D K+GAAI E+L I C   G + E+LRGIR H
Sbjct: 3   IIHDDLKAFVEANVPTGKKKSKVLLGVADSKIGAAIQESLNICCDSGGVILEVLRGIRMH 62

Query: 448 FHSLIKGLTLKACSVAQLGL 507
           F  +IKGLT    S AQLGL
Sbjct: 63  FDKMIKGLTGAMASKAQLGL 82


>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 33/60 (55%), Positives = 45/60 (75%)
 Frame = +3

Query: 519 SRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 698
           SR ++KF+  +VD MI+Q+I+LLD LDK++N + MR REWY +HFPEL  IV +N  Y K
Sbjct: 58  SRYKLKFSPDKVDTMIVQAISLLDDLDKELNNYVMRCREWYGWHFPELGKIVTDNLAYAK 117


>SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)
          Length = 1259

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 480  SVQCGTAWPCHSYSRA-RVKFNVH 548
            +V CGT WPC    RA R++  +H
Sbjct: 1090 AVYCGTCWPCIKLVRALRMRIRIH 1113


>SB_34695| Best HMM Match : CXC (HMM E-Value=4.7)
          Length = 186

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/89 (23%), Positives = 34/89 (38%)
 Frame = +3

Query: 279 GFESIPRRGSSKKEETVKMHTRCTGSQARSSHQRGLGNSVHAYRSSPGDFERHTLSLPLA 458
           GF+ +P R  SK     K+H      +A +   R      HA  S  G+   HT S    
Sbjct: 107 GFDRVPSRRQSKDSAPAKVHAE---GEAPAPSPR-----THAAHSMSGEKGDHTPSRRGC 158

Query: 459 HQRSYPQSVQCGTAWPCHSYSRARVKFNV 545
               +P+ + C     C ++   R +  +
Sbjct: 159 RHSRWPRRITCSD--DCFAFDEPRTRLRL 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,416,660
Number of Sequences: 59808
Number of extensions: 477088
Number of successful extensions: 1235
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)