Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20937
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...   110   8e-25
AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    82   3e-16
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    30   1.9  
AC024817-24|AAF59584.3|  237|Caenorhabditis elegans C-type lecti...    29   2.5  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score =  110 bits (265), Expect = 8e-25
 Identities = 46/65 (70%), Positives = 57/65 (87%)
 Frame = +3

Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
           HSYSR++VKF+VHRVDNM+IQSIALLDQLDKD+N F MRIREWYSYH+PEL  + P+ + 
Sbjct: 153 HSYSRSKVKFDVHRVDNMVIQSIALLDQLDKDINLFGMRIREWYSYHYPELFRLAPDQYK 212

Query: 690 YTKCA 704
           Y++ A
Sbjct: 213 YSRLA 217



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
 Frame = +1

Query: 199 FNSFSTTQVG-DRCFGKYQRVSEGILTEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAI 375
           F+ F  T+   + C      +SEG+   DL  FL+  LPK+KK     LG+ D KL  ++
Sbjct: 53  FDPFKNTEAALENC----NSISEGLAHPDLTNFLQKSLPKKKKH--VVLGINDSKLAGSL 106

Query: 376 SEAL-EIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGL 507
           +EA  +++    G + EILRG R HF  L K L   + S AQL L
Sbjct: 107 TEAFPDLKLVFGGVITEILRGTRVHFERLAKNLPHHSLSKAQLSL 151



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 24/61 (39%), Positives = 40/61 (65%)
 Frame = +2

Query: 71  YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 250
           +VL+EH+AG+AL ++ EF++    L +V+ +  D  +F+ +V L +F P K+   ALEN 
Sbjct: 7   FVLYEHAAGYALMKIKEFDDAGLILQEVDAAHADGYKFSQIVELASFDPFKNTEAALENC 66

Query: 251 N 253
           N
Sbjct: 67  N 67


>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 32/68 (47%), Positives = 49/68 (72%)
 Frame = +3

Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
           HS +R +VKFN  ++D MI+Q+++LLD LDK++N + MR+REWY +HFPEL   + ++  
Sbjct: 142 HSLARYKVKFNPEKIDTMIVQAVSLLDDLDKELNNYVMRVREWYGWHFPELGKTIQDHQA 201

Query: 690 YTKCAEFI 713
           Y K  + I
Sbjct: 202 YAKIIKAI 209



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 23/69 (33%), Positives = 38/69 (55%)
 Frame = +1

Query: 256 VSEGILTEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRG 435
           ++EG L++ L   L+  + + +K     L V D KLG  I E L + C H  ++ E++RG
Sbjct: 63  ITEGKLSKTLKKLLKSSVDETEK-----LAVGDAKLGNLIKEKLSLNCVHDSSINELMRG 117

Query: 436 IRYHFHSLI 462
           +R H   L+
Sbjct: 118 VRAHIEDLL 126



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/57 (26%), Positives = 34/57 (59%)
 Frame = +2

Query: 74  VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALE 244
           VLFE +AG+A+F+++  ++L   +  + E  +  ++    + L++F+  K+   A+E
Sbjct: 3   VLFEVAAGYAVFKLSNEKKLKN-VDNIWEEFSTAEKAQENLQLVSFKKFKTTAGAVE 58


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +3

Query: 561 MIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFI 713
           +I++   +   +D ++N     +R+ Y   FPEL ++VP    Y    + +
Sbjct: 101 LIVKLSHVAADIDNEINVIHKFVRDKYEKRFPELETLVPNALTYLATVQLL 151


>AC024817-24|AAF59584.3|  237|Caenorhabditis elegans C-type lectin
           protein 83 protein.
          Length = 237

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 491 WHSLALPLILTSSCQVQCS 547
           W S+ALPL+LT+S   QC+
Sbjct: 5   WFSIALPLLLTTSVHSQCA 23


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 428 KISGTAPVCVH*ISKASLMAAPSLGSSTPSVHFDRFFLFGRPPSRNRFKSSVRIPSDTR 252
           K+S T    VH  ++  +  A S GS    V    FF F    + +   S+  IP+ TR
Sbjct: 136 KLSTTHSPIVHKTARPPIRVASSFGSKGKKVTRKFFFFFNSTRTASTVPSTTVIPTTTR 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,491,055
Number of Sequences: 27780
Number of extensions: 348331
Number of successful extensions: 863
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)