Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20937
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil... 111 3e-25
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil... 110 8e-25
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 89 4e-18
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron... 88 6e-18
At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron... 62 3e-10
At1g61330.1 68414.m06912 F-box family protein contains Pfam prof... 33 0.14
At1g61320.1 68414.m06911 hypothetical protein 31 1.0
At4g27460.1 68417.m03946 CBS domain-containing protein 28 5.4
At1g73210.2 68414.m08473 expressed protein 28 5.4
At1g73210.1 68414.m08472 expressed protein 28 5.4
At4g33920.1 68417.m04813 protein phosphatase 2C family protein /... 27 9.4
At1g67570.1 68414.m07698 expressed protein 27 9.4
>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 499
Score = 111 bits (268), Expect = 3e-25
Identities = 47/68 (69%), Positives = 61/68 (89%)
Frame = +3
Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
HSYSRA+VKFNV+RVDNM+IQ+I +LD LDKD+N+F+MR+REWYS+HFPELV IV +N+L
Sbjct: 153 HSYSRAKVKFNVNRVDNMVIQAIFMLDTLDKDINSFAMRVREWYSWHFPELVKIVNDNYL 212
Query: 690 YTKCAEFI 713
Y K ++ I
Sbjct: 213 YAKVSKII 220
Score = 74.9 bits (176), Expect = 5e-14
Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Frame = +1
Query: 256 VSEGILTEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEIL 429
VSEG ++++L FLE LPK K K+ K +LGV +PK+G+ I EA +I C V E+L
Sbjct: 66 VSEGYMSDELRSFLELNLPKVKEGKKPKFSLGVSEPKIGSCIFEATKIPCQSNEFVHELL 125
Query: 430 RGIRYHFHSLIKGLTLKACSVAQLGLA 510
RG+R HF IK L AQLGLA
Sbjct: 126 RGVRQHFDRFIKDLKPGDLEKAQLGLA 152
>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 522
Score = 110 bits (265), Expect = 8e-25
Identities = 46/68 (67%), Positives = 61/68 (89%)
Frame = +3
Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
HSYSRA+VKFNV+RVDNM+IQ+I +LD LDKD+N+F+MR+REWYS+HFPELV IV +N+L
Sbjct: 153 HSYSRAKVKFNVNRVDNMVIQAIFMLDTLDKDINSFAMRVREWYSWHFPELVKIVNDNYL 212
Query: 690 YTKCAEFI 713
Y + ++ I
Sbjct: 213 YARVSKMI 220
Score = 75.8 bits (178), Expect = 3e-14
Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +1
Query: 256 VSEGILTEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEIL 429
VSEG++T++L FLE LPK K K+ K +LG+ +PKLG+ I EA +I C V E+L
Sbjct: 66 VSEGVMTDELRSFLELNLPKVKEGKKPKFSLGLAEPKLGSHIFEATKIPCQSNEFVLELL 125
Query: 430 RGIRYHFHSLIKGLTLKACSVAQLGLA 510
RG+R HF IK L +QLGLA
Sbjct: 126 RGVRQHFDRFIKDLKPGDLEKSQLGLA 152
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 88.6 bits (210), Expect = 4e-18
Identities = 36/68 (52%), Positives = 52/68 (76%)
Frame = +3
Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
HS +R ++KF+ +VD MIIQ+I LLD LDK++NT++MR+REWY +HFPEL I+ +N L
Sbjct: 143 HSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIISDNIL 202
Query: 690 YTKCAEFI 713
Y K + +
Sbjct: 203 YAKSVKLM 210
Score = 57.6 bits (133), Expect = 8e-09
Identities = 40/99 (40%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Frame = +1
Query: 232 RCFGKYQRVSEGILTEDLNLFLEGGLPK--RK-KRSKC---TLGVLDPKLGAAISEALEI 393
+ F K+ SE + E + LEG K RK ++ C TL V D KLG I E L+I
Sbjct: 46 KAFEKFDNTSEAL--EAVAKLLEGAPSKGLRKFLKANCQGETLAVADSKLGNVIKEKLKI 103
Query: 394 QCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLA 510
C H AV E+LRG+R F LI GL + + LGL+
Sbjct: 104 DCIHNNAVMELLRGVRSQFTELISGLGDQDLAPMSLGLS 142
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 74 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 250
VL+E +AGFALF+V + ++A +E T +V L AF+ + ALE +
Sbjct: 4 VLYETAAGFALFKVKDEGKMANVEDLCKEFDTP-DSARKMVKLKAFEKFDNTSEALEAV 61
>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 87.8 bits (208), Expect = 6e-18
Identities = 36/68 (52%), Positives = 52/68 (76%)
Frame = +3
Query: 510 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 689
HS +R ++KF+ +VD MIIQ+I LLD LDK++NT++MR+REW+ +HFPEL IV +N L
Sbjct: 142 HSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWFGWHFPELAKIVQDNIL 201
Query: 690 YTKCAEFI 713
Y K + +
Sbjct: 202 YAKAVKLM 209
Score = 53.6 bits (123), Expect = 1e-07
Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Frame = +1
Query: 202 NSFSTTQVGDR-----CFGKYQRVSEGILTEDLNLFLEGGLPK--RK-KRSKC---TLGV 348
N FST ++ + F K+ +E + E + LEG K RK ++ C TL V
Sbjct: 30 NEFSTAKLARKMVKLVAFDKFDNTAEAL--EAVAKLLEGTPSKGLRKFLKANCVGETLAV 87
Query: 349 LDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLA 510
D KLG I E L+I C H AV E+LRGIR LI GL + LGL+
Sbjct: 88 ADSKLGNIIKEKLKIVCVHNNAVMELLRGIRSQLTELISGLGDQDLGPMSLGLS 141
>At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 445
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = +3
Query: 513 SYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLY 692
S+ AR K + MII SI+LLD LDK++NT++ + E Y HFPEL +IV +N LY
Sbjct: 113 SHILARYKLKITSDKTMIILSISLLDDLDKELNTYTTSVCELYGLHFPELANIVQDNILY 172
Query: 693 TKCAEFI 713
K + +
Sbjct: 173 AKVVKLM 179
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +1
Query: 340 LGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGL 471
L V DPKLG I+E L+I+C H AV E+LRG+R L+ GL
Sbjct: 57 LAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGL 100
>At1g61330.1 68414.m06912 F-box family protein contains Pfam
profile: PF00646 F-box domain; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 447
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/87 (25%), Positives = 40/87 (45%)
Frame = +2
Query: 44 YKTTKMSKFYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHK 223
+K + +F + F+ LF +AEF + P++E+ + D+Q F + ++ H
Sbjct: 308 FKFENLREFKIFFKAPTFCTLFDIAEFLKEC---PKLEQFIIDIQNFTFEPQMYFWEIHH 364
Query: 224 SAIVALENINGYLKVFLLRI*IYSSKG 304
A + + N YL L + I KG
Sbjct: 365 KAQIQNTSNNNYLLKCLTDVKIIGYKG 391
>At1g61320.1 68414.m06911 hypothetical protein
Length = 459
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/87 (25%), Positives = 40/87 (45%)
Frame = +2
Query: 44 YKTTKMSKFYVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHK 223
+K +++F + F LF +AEF + P++++ V D+Q F + ++ H
Sbjct: 320 FKFENLTEFKISFITPTFCTLFDIAEFLKEC---PKLKQVVIDIQNFTFEPQMYFWEIHH 376
Query: 224 SAIVALENINGYLKVFLLRI*IYSSKG 304
A + + N YL L + I KG
Sbjct: 377 KAQIQNTSNNNYLLKCLTDVKIIGYKG 403
>At4g27460.1 68417.m03946 CBS domain-containing protein
Length = 391
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 131 LAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENINGYLKV 268
+AAF P S++DL N+ T++A H SA + ++ L V
Sbjct: 172 IAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASAVVSAVSNALAV 217
>At1g73210.2 68414.m08473 expressed protein
Length = 312
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 442 NVCLSKSPGLLLYACTEFPRPR*WLLLAWDPVHRV 338
NV + K PGL+ + P W+ +AW P++ +
Sbjct: 172 NVLVEKYPGLMTLRSVDMS-PASWMAVAWYPIYHI 205
>At1g73210.1 68414.m08472 expressed protein
Length = 314
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 442 NVCLSKSPGLLLYACTEFPRPR*WLLLAWDPVHRV 338
NV + K PGL+ + P W+ +AW P++ +
Sbjct: 174 NVLVEKYPGLMTLRSVDMS-PASWMAVAWYPIYHI 207
>At4g33920.1 68417.m04813 protein phosphatase 2C family protein /
PP2C family protein similar to Ser/Thr protein
phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
thaliana]; similar to protein phosphatase 2C
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 380
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 343 GVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFH 453
G+ + AA+ EA + + G + +I +GIR HFH
Sbjct: 292 GIARRLVRAALEEAAKKREMRYGDIKKIAKGIRRHFH 328
>At1g67570.1 68414.m07698 expressed protein
Length = 456
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 461 SKVLPSKRAVWHSLALPLILTSSCQVQCSPSGQH-DHTINSP 583
++ + S + WH++ + T S Q++ SPSG H + T N P
Sbjct: 327 AQAIASVASRWHAM-MSCSSTDSTQIRASPSGVHLEATTNPP 367
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,041
Number of Sequences: 28952
Number of extensions: 324370
Number of successful extensions: 815
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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