Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20936
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)          27   6.9  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  27   9.2  

>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 418 CRYAVCHCCVGVIYCRPTSPSLFWVLTI 501
           C   VC CC+ V+Y R   P    VL +
Sbjct: 199 CVRFVCPCCMSVLYVRVACPCCMSVLRV 226


>SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)
          Length = 472

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 328 NTRRRHTLTRNPRSCKSISSSPR 260
           N+RRR+T TR+ R+C ++  + R
Sbjct: 213 NSRRRNTRTRSTRTCNTLKRNTR 235


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 340 RSSVNTRRRHTLTRNPRSCKSISSS 266
           R S + RRR T +R+ R C+S SSS
Sbjct: 353 RRSQSPRRRRTRSRSRRRCRSKSSS 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,997,856
Number of Sequences: 59808
Number of extensions: 212834
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)