Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20936
         (517 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   1.1  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    24   3.5  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    24   3.5  
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    23   6.1  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 298 SELVCAFVVCLPMSAPNATCXWRSR 372
           S ++ AFVVC+P+  P     W  R
Sbjct: 385 SFMLQAFVVCVPVQRPKPNPPWADR 409


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 319 VVCLPMSAPNATCXW 363
           V+  PM  PN TC W
Sbjct: 211 VLVRPMHPPNVTCAW 225


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 319 VVCLPMSAPNATCXW 363
           V+  PM  PN TC W
Sbjct: 211 VLVRPMHPPNVTCAW 225


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 276 MDLQERGFRVSVCLRRVFTDERAKCYMXVEESRXVRWLQQR 398
           ++ Q+   R    LRR+ + +R +    +E+ +  RW QQ+
Sbjct: 158 LESQQELQREQELLRRMESQQRQEQRQQLEDQQRQRWRQQQ 198


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,943
Number of Sequences: 2352
Number of extensions: 6786
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)