Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20936
(517 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT030428-1|ABO52848.1| 467|Drosophila melanogaster IP17937p pro... 30 2.1
AE014134-1086|AAF52377.2| 948|Drosophila melanogaster CG9508-PA... 30 2.1
AY207374-1|AAO48768.1| 162|Drosophila melanogaster PARKIN protein. 29 4.9
AY093423-1|AAM18800.2| 482|Drosophila melanogaster PARKIN protein. 29 4.9
AY058754-1|AAL13983.1| 482|Drosophila melanogaster SD01679p pro... 29 4.9
AF510072-1|AAM43930.1| 482|Drosophila melanogaster PARKIN protein. 29 4.9
AE014296-3479|AAN12155.1| 482|Drosophila melanogaster CG10523-P... 29 4.9
AE014296-3478|AAN12154.1| 482|Drosophila melanogaster CG10523-P... 29 4.9
BT003638-1|AAO39642.1| 511|Drosophila melanogaster AT17761p pro... 28 6.5
AE014296-1814|AAN11912.1| 511|Drosophila melanogaster CG12362-P... 28 6.5
AE014296-1813|AAF50159.1| 511|Drosophila melanogaster CG12362-P... 28 6.5
BT011190-1|AAR88551.1| 532|Drosophila melanogaster RE04226p pro... 28 8.6
AE014134-1602|AAF52744.3| 532|Drosophila melanogaster CG31708-P... 28 8.6
AE014134-1601|AAF52743.3| 532|Drosophila melanogaster CG31708-P... 28 8.6
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P... 28 8.6
>BT030428-1|ABO52848.1| 467|Drosophila melanogaster IP17937p
protein.
Length = 467
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 451 PRHSNDIQHICSPNVRQ-SLCCSHRT*RDSSTXM*HLARSSVNTRRRHTLTRNPR 290
P ++ I++I P R L CS + H +S++ T H +TRNPR
Sbjct: 52 PEFTDVIENITVPAGRNVKLACSVKNLGSYKVAWMHFEQSAILTVHNHVITRNPR 106
>AE014134-1086|AAF52377.2| 948|Drosophila melanogaster CG9508-PA
protein.
Length = 948
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 451 PRHSNDIQHICSPNVRQ-SLCCSHRT*RDSSTXM*HLARSSVNTRRRHTLTRNPR 290
P ++ I++I P R L CS + H +S++ T H +TRNPR
Sbjct: 33 PEFTDVIENITVPAGRNVKLACSVKNLGSYKVAWMHFEQSAILTVHNHVITRNPR 87
>AY207374-1|AAO48768.1| 162|Drosophila melanogaster PARKIN protein.
Length = 162
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 385 GCNRGSAARSDCRYAVCHCCVGVIYCR 465
GC G DCR C G ++CR
Sbjct: 37 GCGMGLLVEPDCRKVTCQNGCGYVFCR 63
>AY093423-1|AAM18800.2| 482|Drosophila melanogaster PARKIN protein.
Length = 482
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 385 GCNRGSAARSDCRYAVCHCCVGVIYCR 465
GC G DCR C G ++CR
Sbjct: 357 GCGMGLLVEPDCRKVTCQNGCGYVFCR 383
>AY058754-1|AAL13983.1| 482|Drosophila melanogaster SD01679p
protein.
Length = 482
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 385 GCNRGSAARSDCRYAVCHCCVGVIYCR 465
GC G DCR C G ++CR
Sbjct: 357 GCGMGLLVEPDCRKVTCQNGCGYVFCR 383
>AF510072-1|AAM43930.1| 482|Drosophila melanogaster PARKIN protein.
Length = 482
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 385 GCNRGSAARSDCRYAVCHCCVGVIYCR 465
GC G DCR C G ++CR
Sbjct: 357 GCGMGLLVEPDCRKVTCQNGCGYVFCR 383
>AE014296-3479|AAN12155.1| 482|Drosophila melanogaster CG10523-PC,
isoform C protein.
Length = 482
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 385 GCNRGSAARSDCRYAVCHCCVGVIYCR 465
GC G DCR C G ++CR
Sbjct: 357 GCGMGLLVEPDCRKVTCQNGCGYVFCR 383
>AE014296-3478|AAN12154.1| 482|Drosophila melanogaster CG10523-PB,
isoform B protein.
Length = 482
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 385 GCNRGSAARSDCRYAVCHCCVGVIYCR 465
GC G DCR C G ++CR
Sbjct: 357 GCGMGLLVEPDCRKVTCQNGCGYVFCR 383
>BT003638-1|AAO39642.1| 511|Drosophila melanogaster AT17761p
protein.
Length = 511
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 382 GGCNRGSAARSDCRYAVCHCCVG 450
GGCN CRY C C+G
Sbjct: 307 GGCNHMVCKNPSCRYDFCWVCLG 329
>AE014296-1814|AAN11912.1| 511|Drosophila melanogaster CG12362-PB,
isoform B protein.
Length = 511
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 382 GGCNRGSAARSDCRYAVCHCCVG 450
GGCN CRY C C+G
Sbjct: 307 GGCNHMVCKNPSCRYDFCWVCLG 329
>AE014296-1813|AAF50159.1| 511|Drosophila melanogaster CG12362-PA,
isoform A protein.
Length = 511
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 382 GGCNRGSAARSDCRYAVCHCCVG 450
GGCN CRY C C+G
Sbjct: 307 GGCNHMVCKNPSCRYDFCWVCLG 329
>BT011190-1|AAR88551.1| 532|Drosophila melanogaster RE04226p
protein.
Length = 532
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 451 PRHSNDIQHICSPNVRQ-SLCCSHRT*RDSSTXM*HLARSSVNTRRRHTLTRNPR 290
P + I+++ P R L CS + H +S++ T H +TRNPR
Sbjct: 113 PEFTEYIENVTVPAGRNVKLGCSVKNLGSYKVAWMHFEQSAILTVHNHVITRNPR 167
>AE014134-1602|AAF52744.3| 532|Drosophila melanogaster CG31708-PB,
isoform B protein.
Length = 532
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 451 PRHSNDIQHICSPNVRQ-SLCCSHRT*RDSSTXM*HLARSSVNTRRRHTLTRNPR 290
P + I+++ P R L CS + H +S++ T H +TRNPR
Sbjct: 113 PEFTEYIENVTVPAGRNVKLGCSVKNLGSYKVAWMHFEQSAILTVHNHVITRNPR 167
>AE014134-1601|AAF52743.3| 532|Drosophila melanogaster CG31708-PA,
isoform A protein.
Length = 532
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 451 PRHSNDIQHICSPNVRQ-SLCCSHRT*RDSSTXM*HLARSSVNTRRRHTLTRNPR 290
P + I+++ P R L CS + H +S++ T H +TRNPR
Sbjct: 113 PEFTEYIENVTVPAGRNVKLGCSVKNLGSYKVAWMHFEQSAILTVHNHVITRNPR 167
>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
protein.
Length = 23015
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = +1
Query: 307 VCAFVVCLPMSAPNATCXWRSRVXYGGCNRGSAARSDC-RYAVC--HCCVGVIYCRPTS 474
+C+ +C P+ + N C G C + S C ++ C + C + CR S
Sbjct: 2572 ICSHGICSPLCSTNRDCISEQLCLQGVCQGTCKSNSSCPQFQFCSNNICTKELECRSDS 2630
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 286 RNADSELVCAFVVCLPMSAPNATCXWRSRVXYGGCNRGSAARSDCRYAVCHCCVGVIYCR 465
R+ + L C VC P+ A +A C R G C ++C + C+G + C
Sbjct: 3078 RDCGNGLACFESVCRPLCADDAGCLTNERCQQGVCKPLCRHDNECGHG--ELCLG-LNCV 3134
Query: 466 P 468
P
Sbjct: 3135 P 3135
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,599,736
Number of Sequences: 53049
Number of extensions: 307999
Number of successful extensions: 736
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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