Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20936
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-31|CAB70234.1|  485|Caenorhabditis elegans Hypothetical...    33   0.16 
AF003137-5|AAB93643.1|  491|Caenorhabditis elegans Hypothetical ...    30   0.85 
U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF003137-7|AAN84856.1|  433|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AL132862-31|CAB70234.1|  485|Caenorhabditis elegans Hypothetical
           protein Y73F8A.34a protein.
          Length = 485

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 382 GGCNRGSAARSDCRYAVCHCCVG 450
           GGCN  S   S CRY  C  C+G
Sbjct: 290 GGCNHMSCKSSSCRYEFCWLCLG 312


>AF003137-5|AAB93643.1|  491|Caenorhabditis elegans Hypothetical
           protein C27A12.6 protein.
          Length = 491

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 382 GGCNRGSAARSDCRYAVCHCCV 447
           GGCNR     S CRY  C  C+
Sbjct: 291 GGCNRMLCTNSGCRYEFCWMCL 312


>U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical
           protein C46G7.3 protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 442 SNDIQHICSPNVRQSLCCSHRT*RDSSTXM*HLARSSVNTRRRHTLTRNPRS 287
           +N+ +   SPN+R+ L  S      SST    L  +  NT R    T +PR+
Sbjct: 270 TNECESTTSPNLREELNLSPIRYPASSTPHNRLTFAPTNTNRLQDTTNSPRT 321


>AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical
           protein C27A12.8 protein.
          Length = 494

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 382 GGCNRGSAARSDCRYAVCHCCVG 450
           GGCN  +   + CR+  C  C+G
Sbjct: 293 GGCNHMTCKNTACRFEFCWMCLG 315


>AF003137-7|AAN84856.1|  433|Caenorhabditis elegans Hypothetical
           protein C27A12.7b protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 382 GGCNRGSAARSDCRYAVCHCCVG 450
           GGCN+ +   + C++  C  C+G
Sbjct: 232 GGCNQITCKNTGCKFQFCWMCLG 254


>AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical
           protein C27A12.7a protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 382 GGCNRGSAARSDCRYAVCHCCVG 450
           GGCN+ +   + C++  C  C+G
Sbjct: 296 GGCNQITCKNTGCKFQFCWMCLG 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,604,427
Number of Sequences: 27780
Number of extensions: 162782
Number of successful extensions: 449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)