Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20936
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   0.35 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.4  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   4.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.5  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 95  CYCMCHRCKI 124
           CYC C +CKI
Sbjct: 2   CYCTCEKCKI 11


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 9/36 (25%)
 Frame = +1

Query: 400 SAARSD---CRY-----AVCHCC-VGVIYCRPTSPS 480
           S ARS+   CRY     A+CHCC      C  T P+
Sbjct: 728 STARSEQFLCRYEAHCFALCHCCDFDACDCEMTCPA 763


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 436 HCCVGVIYCRPTSPSLFW 489
           HC  GV  CR TS    W
Sbjct: 73  HCEKGVCICRKTSFKDLW 90


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 144 NGNLHHETRRHSVRKRFRDCKLRFIKLLTLRRDL 245
           NG  +   ++H+V+      KLRF  L    ++L
Sbjct: 169 NGETYLRIKKHAVKFNPAKVKLRFENLFDGNKEL 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,523
Number of Sequences: 438
Number of extensions: 2047
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)