Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20936
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28370.1 68417.m04061 zinc finger (C3HC4-type RING finger) fa...    27   7.5  
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    27   9.9  
At2g46080.1 68415.m05732 expressed protein                             27   9.9  

>At4g28370.1 68417.m04061 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 466

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 145 LFYFYFIYFTSVTHTITT*YLLQYINNIK 59
           L +F+++++TS   T+    +L Y++N+K
Sbjct: 34  LLHFFYVFYTSGLSTMLWLNVLDYLSNVK 62


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 147 GNLHHETRRHSVRKRFRDCKLRFIKL 224
           GNL  +T    +RK F DC +  ++L
Sbjct: 267 GNLAWDTTERDIRKLFSDCVINSVRL 292


>At2g46080.1 68415.m05732 expressed protein
          Length = 347

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -1

Query: 343 ARSSVNTRRRHTLTRNPR--SCKSISSS 266
           ARSS+++ R+H  T NPR  +C+++  S
Sbjct: 146 ARSSLDSWRQHVNTNNPRIENCRAVLDS 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,899,992
Number of Sequences: 28952
Number of extensions: 145647
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)