BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20936 (517 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g28370.1 68417.m04061 zinc finger (C3HC4-type RING finger) fa... 27 7.5 At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 27 9.9 At2g46080.1 68415.m05732 expressed protein 27 9.9 >At4g28370.1 68417.m04061 zinc finger (C3HC4-type RING finger) family protein contains Pfam PF00097: Zinc finger, C3HC4 type (RING finger) Length = 466 Score = 27.1 bits (57), Expect = 7.5 Identities = 9/29 (31%), Positives = 20/29 (68%) Frame = -1 Query: 145 LFYFYFIYFTSVTHTITT*YLLQYINNIK 59 L +F+++++TS T+ +L Y++N+K Sbjct: 34 LLHFFYVFYTSGLSTMLWLNVLDYLSNVK 62 >At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing protein low similarity to nucleolar phosphoprotein (Nopp52), Tetrahymena thermophila, EMBL:TT51555; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 597 Score = 26.6 bits (56), Expect = 9.9 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +3 Query: 147 GNLHHETRRHSVRKRFRDCKLRFIKL 224 GNL +T +RK F DC + ++L Sbjct: 267 GNLAWDTTERDIRKLFSDCVINSVRL 292 >At2g46080.1 68415.m05732 expressed protein Length = 347 Score = 26.6 bits (56), Expect = 9.9 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%) Frame = -1 Query: 343 ARSSVNTRRRHTLTRNPR--SCKSISSS 266 ARSS+++ R+H T NPR +C+++ S Sbjct: 146 ARSSLDSWRQHVNTNNPRIENCRAVLDS 173 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,899,992 Number of Sequences: 28952 Number of extensions: 145647 Number of successful extensions: 323 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 319 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 322 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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