Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20934
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    27   2.4  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.5  
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    25   7.3  

>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 272 LI*TPSDSIIISCHHCCSKHKTTLLPHYWKAVQD-FRMQILY 150
           L+ T + SI+   HHC     T L  H W+  +  +  Q+ Y
Sbjct: 262 LLETKTFSIVFRLHHCLQYTNTDLEMHIWEEKETIYEQQMTY 303


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 224 CSKHKTTLLPHYWKAVQDFRMQILY 150
           C     T  PH WKAV   R ++L+
Sbjct: 147 CPDCARTYTPHIWKAVCQVRQKVLH 171


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 53   KTLLIN*LLTVEKRSPQTKYIQYCQFKVIIY*DKVFA 163
            KT L+  + T E R     YI+ C     IY D +FA
Sbjct: 2290 KTALLLKMRTFEGRFDNKLYIEACDLLSTIYRDPIFA 2326


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 129 N*QYCMYLVCGDLFSTVNN*LISNVFPINHDLQTYL 22
           N Q  M    GD+     N L++NV  IN+D   YL
Sbjct: 42  NQQGVMLFSTGDIRIGAYNYLVNNVTEINNDTDAYL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,456
Number of Sequences: 5004
Number of extensions: 57389
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)