Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20934
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0257 - 16255063-16255183,16255258-16255334,16255861-162559...    34   0.11 
03_01_0507 + 3827500-3827622,3827912-3828064                           29   2.5  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    29   3.3  
11_02_0147 - 8791117-8792502                                           28   7.5  
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728...    27   9.9  
01_01_0418 - 3142659-3145622                                           27   9.9  

>10_08_0257 -
           16255063-16255183,16255258-16255334,16255861-16255973,
           16256006-16256016,16256328-16256337,16256423-16256486,
           16256582-16256646,16257339-16257474
          Length = 198

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +2

Query: 299 KIDLPEGTHIIGRGKFIVNDAEDMRVSRNHAEIEVTDTCVILKSLHQNPCFYIDKLSNSK 478
           K+DLPE   + G  + I  +   M  S+ +  + V DTC+   +L   P  YID LS + 
Sbjct: 43  KLDLPE---LQGEPEDISKEKARMAASQVNGPVLVEDTCLCFNALKGLPGPYIDLLSLNN 99

Query: 479 RTLTQNNAQLYVMVI 523
             L   +   + M I
Sbjct: 100 LLLAYEDKSAFAMCI 114


>03_01_0507 + 3827500-3827622,3827912-3828064
          Length = 91

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 377 SRNHAEIEVTDTCVILKSLHQNPCFYIDKLSNSKRTLTQNNAQLYVM 517
           SR+ A   + +TC  +KSLH+      D+LS    T+  N+ Q  ++
Sbjct: 40  SRSSASKLLKETCSYIKSLHREVDDLSDRLSELMSTMDNNSPQAEII 86


>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
            18449864-18449959,18452287-18452447,18452669-18452790,
            18452872-18453239,18453653-18453739,18453835-18453969,
            18454349-18454471,18454771-18454854,18455023-18455187,
            18455310-18455486,18455660-18455773,18455912-18456016,
            18457056-18457174,18457244-18457385,18457461-18457555,
            18457757-18457862,18458125-18458204,18458285-18458461,
            18459828-18459912,18460024-18460104,18460208-18460351,
            18460468-18460563,18460654-18460854,18461462-18461895,
            18462417-18462478,18462622-18462872,18462956-18463030,
            18463110-18463300,18463696-18463867,18463956-18464020,
            18464646-18464778,18464861-18464962,18465047-18465130,
            18465656-18465730,18465818-18465877,18465967-18466223,
            18466560-18466608,18466781-18466941,18467013-18467079,
            18467174-18467299,18467422-18467592,18468566-18468769,
            18469059-18469165,18469608-18469737,18469774-18469959,
            18470704-18470742
          Length = 2202

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 347  IVNDAEDMRVSRNHAEIEVTDTCVILKSLHQNPCFYID 460
            +VN   +  +S +  E +  D C  L SLH+N  F +D
Sbjct: 1496 VVNPFRNKELSPSFLEKQYRDACQALGSLHENITFLVD 1533


>11_02_0147 - 8791117-8792502
          Length = 461

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 328 HRQRKVYCK*CRRYEGIKKSCR 393
           H Q++++C  CR Y  + + C+
Sbjct: 112 HSQQRIFCSKCRSYSHLSRDCK 133


>04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,
            7280242-7280547,7280643-7280857,7281395-7281689,
            7281906-7281983,7282070-7282705,7283016-7283102,
            7283945-7284265,7285503-7287599
          Length = 1483

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -3

Query: 638  LGISLLSAGVLLL-VTSFFITSDEHHINSNQYVSGSIPNLSPLHTIVHYSVLMSVCCLI 465
            LG  L   G LLL +T+F + S   +    ++V  S+     L+++V+Y++  S+ C+I
Sbjct: 1142 LGFRLELIGTLLLSITAFLMISLPSNFIKKEFVGMSLSYGLSLNSLVYYTI--SMTCMI 1198


>01_01_0418 - 3142659-3145622
          Length = 987

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -2

Query: 279 IRTNLNSIGLNYY*LSSLLFKT*NNSPSTLLESCSRFQNANTLS**IITLN*QYCMYLVC 100
           +  N+ SI  N + L  L   T + S +++++ CS F N+ T    +++L   Y    +C
Sbjct: 162 VAPNIVSIVANLHNLKELYMGTIDLSSNSMVQWCSAFSNSTTPQLQVLSLPYCYLEVPIC 221

Query: 99  GDL 91
             L
Sbjct: 222 ESL 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,164
Number of Sequences: 37544
Number of extensions: 300402
Number of successful extensions: 588
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)