BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20934 (658 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 33 0.20 SB_38644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8 SB_36754| Best HMM Match : DUF308 (HMM E-Value=1.1) 28 7.7 >SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) Length = 475 Score = 33.1 bits (72), Expect = 0.20 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = +2 Query: 365 DMRVSRNHAEIEVTDTCVILKSLHQNPCFYIDKLSNSKR 481 D RVSR+HA +++ + + L + H NP F+ KLS ++ Sbjct: 89 DKRVSRSHATLDINNGKLTLSATHTNPTFF--KLSGREK 125 >SB_38644| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 253 Score = 28.3 bits (60), Expect = 5.8 Identities = 10/35 (28%), Positives = 21/35 (60%) Frame = +2 Query: 446 CFYIDKLSNSKRTLTQNNAQLYVMVINLVYYLIHI 550 C + +KL N+K+ +T+ N ++ ++ + L HI Sbjct: 201 CLHFEKLRNTKKMITKGNEKMQMISFSAPQCLFHI 235 >SB_36754| Best HMM Match : DUF308 (HMM E-Value=1.1) Length = 179 Score = 27.9 bits (59), Expect = 7.7 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -3 Query: 656 CVALNSLGISLLSAGVLLLVTSFFITSDEHHINSNQYVSGSIPNLS 519 C+A +G + GVL LV SF DE I+ + + N+S Sbjct: 12 CIAQIVVGALMFIVGVLALVNSFTPFLDEEKIDDGRNIREGFRNIS 57 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,160,806 Number of Sequences: 59808 Number of extensions: 396565 Number of successful extensions: 848 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 753 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 847 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1681430875 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -