Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20934
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)                 33   0.20 
SB_38644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_36754| Best HMM Match : DUF308 (HMM E-Value=1.1)                    28   7.7  

>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
          Length = 475

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 365 DMRVSRNHAEIEVTDTCVILKSLHQNPCFYIDKLSNSKR 481
           D RVSR+HA +++ +  + L + H NP F+  KLS  ++
Sbjct: 89  DKRVSRSHATLDINNGKLTLSATHTNPTFF--KLSGREK 125


>SB_38644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 446 CFYIDKLSNSKRTLTQNNAQLYVMVINLVYYLIHI 550
           C + +KL N+K+ +T+ N ++ ++  +    L HI
Sbjct: 201 CLHFEKLRNTKKMITKGNEKMQMISFSAPQCLFHI 235


>SB_36754| Best HMM Match : DUF308 (HMM E-Value=1.1)
          Length = 179

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 656 CVALNSLGISLLSAGVLLLVTSFFITSDEHHINSNQYVSGSIPNLS 519
           C+A   +G  +   GVL LV SF    DE  I+  + +     N+S
Sbjct: 12  CIAQIVVGALMFIVGVLALVNSFTPFLDEEKIDDGRNIREGFRNIS 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,160,806
Number of Sequences: 59808
Number of extensions: 396565
Number of successful extensions: 848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)