Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20934
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01190.1 68417.m00157 phosphatidylinositol-4-phosphate 5-kina...    29   3.6  
At4g25830.1 68417.m03715 integral membrane family protein contai...    28   6.3  

>At4g01190.1 68417.m00157 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam profile
           PF01504: Phosphatidylinositol-4-phosphate 5-Kinase
          Length = 401

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
 Frame = +2

Query: 350 VNDAEDMRVS---RNHAEIEVTDTCVILKSLHQNPCFYIDKLSNSKRTLTQNNAQLYVM- 517
           VN   D++ S   R++ +IEV +T V LK +  + CFY+D L+  +R + Q      ++ 
Sbjct: 147 VNKLYDLKGSPKGRSNKKIEVRNTTV-LKDIDFDFCFYVDPLAR-QRIIKQTKLDCELLE 204

Query: 518 VINLVYYLIHIGLN*YGAHQ 577
              ++ Y + +GL   G+ Q
Sbjct: 205 EEGIMDYSLLVGLQSKGSCQ 224


>At4g25830.1 68417.m03715 integral membrane family protein contains
           TIGRFAM TIGR01569 : plant integral membrane protein
           TIGR01569; contains Pfam PF04535 : Domain of unknown
           function (DUF588)
          Length = 175

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 410 TCVILKSLHQNPCFYIDKLSNSKRTLTQNNAQLYVMVINLVYYLIHIGLN*YGAHQ 577
           +C+I          YI K + S R L    A+LY+ V+   Y L+ +GL  Y   Q
Sbjct: 23  SCLIGLDSQTKEIAYIHK-NVSFRYLLALEAELYIDVVVAAYNLVQLGLGWYNVEQ 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,433,274
Number of Sequences: 28952
Number of extensions: 273528
Number of successful extensions: 596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)