Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20933
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 143 3e-35
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 45 1e-05
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 43 5e-05
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 38 0.002
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 34 0.025
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 31 0.13
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 29 0.54
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 29 0.94
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 2.2
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 2.9
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 27 2.9
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 3.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.8
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 26 5.0
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 6.6
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 6.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.7
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 8.7
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.7
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa... 25 8.7
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 8.7
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 143 bits (346), Expect = 3e-35
Identities = 66/101 (65%), Positives = 82/101 (81%), Gaps = 1/101 (0%)
Frame = +1
Query: 451 EREN-EGQSEQDFSTQM*CLLNRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGE 627
ERE + + E+ S + C +NRQLIYN+PEQLFADAG+M+IEHADF+GIERL LVTGGE
Sbjct: 267 EREKMKAKVEKIKSHNINCFINRQLIYNWPEQLFADAGIMSIEHADFDGIERLSLVTGGE 326
Query: 628 IVSTFDSPDKVKLGHCKLIEEVLIGDESLIRFSGVALGSAC 750
I STFD P+ VKLGHCK IEE++IG++ +I+FSGV G AC
Sbjct: 327 IASTFDHPELVKLGHCKKIEEIIIGEDKMIKFSGVEAGEAC 367
Score = 120 bits (290), Expect = 2e-28
Identities = 56/89 (62%), Positives = 71/89 (79%)
Frame = +2
Query: 257 GLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAE 436
G L++SFLDEGF+LNK +GV+ PK +ENANILIANT MDTDK+KVFG+ ++VD+ K+AE
Sbjct: 203 GKLDDSFLDEGFILNKTIGVNCPKVMENANILIANTAMDTDKVKVFGARVRVDTTGKLAE 262
Query: 437 LEVAEKEKMKDKVNKILAHKCNVFLTDNL 523
LE AE+EKMK KV KI +H N F+ L
Sbjct: 263 LERAEREKMKAKVEKIKSHNINCFINRQL 291
Score = 94.3 bits (224), Expect = 2e-20
Identities = 53/83 (63%), Positives = 60/83 (72%)
Frame = +3
Query: 3 QTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTK 182
Q II G+RIA+ A AL +S D+ + A R DLENIARTTLSSKILS +K HF +
Sbjct: 120 QVIIDGYRIATKTAIDALRASSIDNSSD--PAKFRSDLENIARTTLSSKILSQNKNHFAQ 177
Query: 183 LAVDAVLRLKGSGNLKAIQIIKI 251
LAVDAVLRLKGS NL IQIIKI
Sbjct: 178 LAVDAVLRLKGSTNLDNIQIIKI 200
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 45.2 bits (102), Expect = 1e-05
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Frame = +3
Query: 6 TIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKL 185
TII G+R+A A + + + +L + SL N+A+T++SSKI+ N + F+ +
Sbjct: 121 TIITGYRLAIREAVKFMTDVLSCSVDSLGKESLI----NVAKTSMSSKIIGNDSDFFSTM 176
Query: 186 AVDAVLRLKGSGN-------LKAIQIIK 248
AVDA+L +K S + +KA+ I+K
Sbjct: 177 AVDAMLSVKTSNSKGETRYPVKAVNILK 204
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 42.7 bits (96), Expect = 5e-05
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Frame = +3
Query: 9 IIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLA 188
II G+R A+ A + E + H +E LR L A T ++SK++ ++ FTK+
Sbjct: 125 IIRGYRKAAQLAVNKIKEIAI-HLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMV 183
Query: 189 VDAVLRLKGSG-NLKAIQIIKISEVFLKNHSWMKGSC*TKKLVY 317
VDAVL L N I I K+ +++ +KG K Y
Sbjct: 184 VDAVLTLDQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKKTFSY 227
Score = 36.7 bits (81), Expect = 0.004
Identities = 22/82 (26%), Positives = 34/82 (41%)
Frame = +1
Query: 505 LLNRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLI 684
+L++ I + Q FAD + + + R+ GG I ST + ++ LG C
Sbjct: 294 VLSKLPIGDLATQYFADRDIFCAGRVAADDLNRVVQAVGGSIQSTCSNIEEKHLGTCDTF 353
Query: 685 EEVLIGDESLIRFSGVALGSAC 750
EE IG + F G C
Sbjct: 354 EERQIGGDRFNLFEGCPKAKTC 375
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +1
Query: 514 RQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEV 693
R + + A +M I+ + + +E + TG + ++ +S + KLGH L+EE
Sbjct: 295 RDAVNDLALHFLAKLKIMVIKDIERDEVEFICKSTGCKPIADIESFAEDKLGHADLVEET 354
Query: 694 LIGDESLIRFSGV 732
E +++FSGV
Sbjct: 355 SSSGEKIVKFSGV 367
Score = 33.1 bits (72), Expect = 0.043
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +3
Query: 93 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL-----RLKGSGNLKAIQIIK 248
E S R L A T+L+SKI+S + +AVDAVL R+ + +LK I+I+K
Sbjct: 143 ELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDLKDIRIVK 199
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 33.9 bits (74), Expect = 0.025
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 126 ARTTLSSKILSNHKEHFTKLAVDAVL 203
A+T+L SK++S +HF +AVDAVL
Sbjct: 171 AKTSLGSKVVSKAHDHFANIAVDAVL 196
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 31.5 bits (68), Expect = 0.13
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 505 LLNRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLI 684
++N++ I + A G+MA+ A +ERL L GG ++ D + LG +
Sbjct: 290 IINQKGIDPLSLDVLAKNGIMALRRAKRRNMERLQLACGGVAQNSVDDLNPEVLGWAGSV 349
Query: 685 EEVLIGDE 708
E +G+E
Sbjct: 350 YERTLGEE 357
Score = 29.5 bits (63), Expect = 0.54
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 114 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLK 212
L N+A+T+LS+KI S E VDA+L ++
Sbjct: 146 LLNVAKTSLSTKISSKVVESLAPAVVDAILTIR 178
Score = 28.7 bits (61), Expect = 0.94
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2
Query: 323 PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCN 502
PK+V+NA ILI N ++ +K ++ S + + L +E++ + +K+ KI+ K
Sbjct: 220 PKQVKNAYILILNVSLEYEKSEI-NSGFFYSTSEQRERLVESERKFVDNKLRKIVELKKE 278
Query: 503 V 505
V
Sbjct: 279 V 279
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 29.5 bits (63), Expect = 0.54
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 102 LRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 248
L V E++ LS LS +K T ++ +LR GS LKAI ++K
Sbjct: 518 LPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLK 566
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 28.7 bits (61), Expect = 0.94
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 314 VHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAH 493
+H+ K E T K+KV+G + ++I+ L + KEK KD ++ H
Sbjct: 616 IHKEAKSEIEKDSSKPTEDQESKLKVYGRV----AYSRISNLHKSSKEKGKDSQVRVALH 671
Query: 494 KCNVFLTD 517
K N L +
Sbjct: 672 KENTALNN 679
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = -3
Query: 728 PEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSLSIPSKSA 579
P + + +S+P+ +I+ ++ +S + + PP + S+ IP K+A
Sbjct: 100 PAEALTISTPVDPINIDELDRAYAVSPSDTSNLLHPPTSSSSIPIPIKNA 149
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 293 LLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGST 403
L N P K E N++ AN + DK + FGS+
Sbjct: 108 LYNHMSSAPSPNKKEETNVVHANEDISLDKRQSFGSS 144
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 125 RTDHTELKDPFKSQRAFHKISS*CSFAFERI--W*FKSYSNYQNI*GLLEESFLDEGFLL 298
+ D +L +P+++ FH S C F F+ + W S + N+ + FLD +
Sbjct: 105 KVDVAQLVEPYRNDCIFHDASGACHFFFKEVGNWTVSSIALPSNLANPPIDYFLDSSSTV 164
Query: 299 NKKV 310
+++
Sbjct: 165 IQRI 168
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 713 KLSSPIRTSSINLQ*PSFTLSGESNV-DTISPPVTKPSLSIPSKSACS 573
K S + +S ++ TLS S V T S PVT S S+ KSA S
Sbjct: 194 KASKKLTSSPTSVASKKATLSSVSKVASTSSLPVTSVSASVDPKSAAS 241
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 623 PPVTKPSLSIPSKSACSIAITPASA 549
PPV KPS++ P S+A+ P A
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA 1116
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 502 CLLNRQLIYNYPEQLFADAGV 564
CLLN YNY LF D G+
Sbjct: 162 CLLNYGATYNYDHTLFKDNGL 182
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 347 C*HFLLSLVDVHQLFCLARTLHPRMILQEDL 255
C HF LS V VH FC + L ++ + ++
Sbjct: 106 CHHFKLSKVKVHLFFCRLKLLDYGLLNESEM 136
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 380 KIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKIL-AHK 496
K+K G T++ D A VA K+ K K K+L AHK
Sbjct: 237 KLKELGITLESDVSHPKAASPVASKKSSKKKNKKVLAAHK 276
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.7
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -3
Query: 749 QAEPNATPEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSL---SIPSKSA 579
Q ++T ++P TSS L S S S + S +T SL SIPS S+
Sbjct: 186 QPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSS 245
Query: 578 CSIAITPASANNCS 537
S + + + +++ S
Sbjct: 246 SSSSTSSSLSSSSS 259
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 135 TLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 248
T +KILS+H E TK V + GS +L A + K
Sbjct: 2222 TTHAKILSSHPEWDTKAVTLTVSYIPGSISLAAYTVSK 2259
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 8.7
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 230 SYSNYQNI*GLLEESFLDEGFLLNKKV-GVHQPKKVENANILIANTPMDTDKIKVFGSTI 406
+YS+ NI G + + FL L + G + PK + + L+A +TD + G+ I
Sbjct: 258 TYSSEHNI-GNISDPFLQVKILQFLSILGQNNPKIYDKMSDLLAQVCTNTDSSRNAGNAI 316
Query: 407 KVDSMAKIAEL 439
++ I +L
Sbjct: 317 LYQAVRTILDL 327
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 725 EKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSLSIPSKSACSI 570
+K IK + TSS N Q S+T G N + T PS+ IP+ A ++
Sbjct: 604 DKTIKTNQATSTSSSNTQEISYT--GTLNDNINEGLSTFPSIDIPASEADNV 653
>SPBC25H2.07 |tif11||translation initiation factor
eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +1
Query: 514 RQLIYNYPEQLFADAGVMA----IEHADFEGIERLGLVTG 621
R+L Y Q++A M IE A F+G++RLG + G
Sbjct: 24 RELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRG 63
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 413 DSMAKIAELEVAEKEKMKDKVNKILAHKCNVFLTDNLY 526
DS A A V++K+ +KD N +L +C++ L+ +
Sbjct: 857 DSEACAAASFVSKKKSIKDVFNVLLEGRCSLILSHRCF 894
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,936
Number of Sequences: 5004
Number of extensions: 60669
Number of successful extensions: 220
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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