Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20933
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 142 2e-34
SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 1e-24
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 101 6e-22
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 34 0.14
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_59319| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 29 5.3
SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05) 29 5.3
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0) 28 7.0
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 142 bits (345), Expect = 2e-34
Identities = 66/83 (79%), Positives = 71/83 (85%)
Frame = +1
Query: 502 CLLNRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKL 681
C +NRQLIYNYPEQLFADAGVMAIEHADFEG+ERL LVTGGEIVSTF PD VKLG CK
Sbjct: 286 CFINRQLIYNYPEQLFADAGVMAIEHADFEGVERLALVTGGEIVSTFGRPDLVKLGTCKK 345
Query: 682 IEEVLIGDESLIRFSGVALGSAC 750
IEEV+IG++ LI FSG AL AC
Sbjct: 346 IEEVMIGEDKLIHFSGCALNEAC 368
Score = 129 bits (312), Expect = 2e-30
Identities = 60/89 (67%), Positives = 74/89 (83%)
Frame = +2
Query: 257 GLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAE 436
G + +SFLDEGFLL+KK+GV+QPKK+ENA ILIANTPMD DKIKVFGS ++VDS AKIA+
Sbjct: 204 GGMVDSFLDEGFLLDKKIGVNQPKKIENAKILIANTPMDADKIKVFGSRVRVDSTAKIAD 263
Query: 437 LEVAEKEKMKDKVNKILAHKCNVFLTDNL 523
LE+AEK+KMK+KV I+ H N F+ L
Sbjct: 264 LEMAEKQKMKEKVEMIIKHDINCFINRQL 292
Score = 101 bits (243), Expect = 5e-22
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +3
Query: 3 QTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTK 182
QTI+AGWR + AA++AL A+ DH + + R DL NIARTTLSSKIL H++HF K
Sbjct: 121 QTIVAGWRKSVKAAEKALEAAAVDHSSDPEK--FREDLMNIARTTLSSKILVQHRDHFAK 178
Query: 183 LAVDAVLRLKGSGNLKAIQIIK 248
LAVDAVLRLKGSG+L AIQIIK
Sbjct: 179 LAVDAVLRLKGSGDLNAIQIIK 200
>SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 110 bits (264), Expect = 1e-24
Identities = 50/72 (69%), Positives = 61/72 (84%)
Frame = +2
Query: 296 LNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKV 475
++KK+GV+QPKK+ENA ILIANTPMD DK+KVFGS ++VDS AKIAELE AEK+KMKDKV
Sbjct: 1 MDKKIGVNQPKKIENAKILIANTPMDADKVKVFGSRVRVDSTAKIAELEKAEKQKMKDKV 60
Query: 476 NKILAHKCNVFL 511
I+ H N F+
Sbjct: 61 EMIIKHGINCFV 72
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 101 bits (242), Expect = 6e-22
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +3
Query: 3 QTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTK 182
QTI+AGWR + AA++AL A+ DH + + R DL NIARTTLSSKIL H++HF K
Sbjct: 39 QTIVAGWRKSVKAAEKALEAAAVDHSSDPEK--FRDDLMNIARTTLSSKILVQHRDHFAK 96
Query: 183 LAVDAVLRLKGSGNLKAIQIIK 248
LAVDAVLRLKGSG+L AIQIIK
Sbjct: 97 LAVDAVLRLKGSGDLNAIQIIK 118
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/81 (34%), Positives = 41/81 (50%)
Frame = +3
Query: 75 HQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKIS 254
H K + +R LE A T LSSK+++ KE F K+ VDAV+ L L I + K+S
Sbjct: 11 HVKKNDAGEMRQLLERCAATALSSKLIATQKEFFAKMVVDAVMMLDELLPLDMIGMKKVS 70
Query: 255 EVFLKNHSWMKGSC*TKKLVY 317
L++ ++G K Y
Sbjct: 71 GGALEDSMLIEGVAFKKTFSY 91
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Frame = +3
Query: 126 ARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN-------LKAIQIIK 248
A T LSSK++ + F + VDAV+ +K +GN +KAI ++K
Sbjct: 17 ANTALSSKLIGQQGDFFANMIVDAVMAVKRTGNKGEAKYPIKAINVLK 64
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 32.3 bits (70), Expect = 0.43
Identities = 21/90 (23%), Positives = 44/90 (48%)
Frame = +3
Query: 9 IIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLA 188
+ G+ +A A + L E + + R L N+A+T+L +K+ + + T++
Sbjct: 221 VTEGFEVAKKKALEVLEEVKVSREMD------RDTLINVAKTSLRTKVRTELADLLTEVV 274
Query: 189 VDAVLRLKGSGNLKAIQIIKISEVFLKNHS 278
VDAVL ++ + ++++ E+ K S
Sbjct: 275 VDAVLTIRKPKKPIDLHMVEVMEMRHKTDS 304
>SB_59319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 28
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 389 VFGSTIKVDSMAKIAELEVAEKEKMKDK 472
VFGS ++VDS AKIA +E +K K K
Sbjct: 1 VFGSRVRVDSTAKIAGVESRKKWKRTPK 28
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 28.7 bits (61), Expect = 5.3
Identities = 27/85 (31%), Positives = 40/85 (47%)
Frame = +2
Query: 296 LNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKV 475
+ K+ + + K E +ILI NTP +K G +K + ELEV M ++
Sbjct: 1182 IEKREDLEENTKSEEGSILIKNTPQTEQALK--GLNVKDKELND--ELEVF--SNMLGEL 1235
Query: 476 NKILAHKCNVFLTDNLYTTTQSSCL 550
+I +K NV T N T TQ + L
Sbjct: 1236 EQIPLNKNNV--TPNSTTITQKTSL 1258
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 595 IERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIG 702
IE + + TGG IV F KLG ++ E+ G
Sbjct: 328 IELIAIATGGRIVPRFSELTSEKLGKAGIVRELSFG 363
>SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)
Length = 206
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 595 IERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIG 702
IE + + TGG IV F KLG ++ E+ G
Sbjct: 43 IELIAIATGGRIVPRFSELTSEKLGKAGIVRELSFG 78
>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1994
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = -3
Query: 743 EPNATPE--KRIKLSS-PIRTSSINLQ*-PSFTLSGESNVDTISPPVTKP--SLSIPSKS 582
+P+ TP K + L++ P T+S L+ PS TLS + PP + P S + +
Sbjct: 1054 QPSVTPASTKSVSLTATPATTTSEVLEPSPSLTLSSSEAASSTLPPTSLPVAQSSTSTST 1113
Query: 581 ACSIAITPASA 549
+ A+TP+S+
Sbjct: 1114 VKTAAVTPSSS 1124
>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
Length = 537
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -3
Query: 734 ATPEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSLSIPSKSACSIAITPA 555
A+P + +S SS ++Q S ++ + PP P + P S ++AIT A
Sbjct: 229 ASPSPATQTTSSPTNSSTSVQVQPLETSKDNAKQLMPPPPPPPRATPPPVSIATVAITTA 288
Query: 554 SA 549
+A
Sbjct: 289 AA 290
>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -3
Query: 707 SSPIRTSSINLQ*PSFTLSGESNVDTI----SPPVTKPSLSIPSKSACSIAITPASA 549
S+P+ T+S+ TL+ S VDT SP T P+ S P K+ +A TP A
Sbjct: 183 STPVETTSLASTPVDTTLTASSPVDTTLTASSPVETTPTASPPVKTT-PLAATPVYA 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,230,250
Number of Sequences: 59808
Number of extensions: 426223
Number of successful extensions: 1137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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