Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20932
         (587 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.5  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   5.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 227 GVAGAEVHIPLTDYNGRFDGLEVVSPHEFEIVIYLNQM 340
           G    ++H  LT+    F+ +  V  H F  +I L Q+
Sbjct: 84  GTFQGDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQI 121


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 514 KCSYRDCVKMIAETTEVKL 570
           KC  + CVK + E  E  L
Sbjct: 47  KCENQKCVKYLVEDEETSL 65


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 187 CIVFVICAFLLATLSL 140
           CI +  CAF++ T+ L
Sbjct: 145 CIYYFYCAFIIFTVHL 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,154
Number of Sequences: 336
Number of extensions: 2502
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)