Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20932
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    30   0.22 
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   3.5  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   4.7  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   8.2  
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    25   8.2  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   8.2  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    25   8.2  

>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 278 FDGLEVVSPHEFEIVIY-LNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITA 448
           F  LE ++  +F ++I  L + G+L+   +  LP   +LKLS  +    S+W +   A
Sbjct: 26  FSFLEALTQEDFPVLIRALKRFGILDGFPNTRLPNEMILKLSSVQGEDASVWEQIPAA 83


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 71  WLYWNSRGAHGSGAAVHARAQ 9
           +L W    AHG+G A+HA+ Q
Sbjct: 224 FLIWALVKAHGAGDAIHAKTQ 244


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 85  GTRHGGCIGIHAELMVRVRRCTH 17
           G+  G   G+H+ELM+   RC H
Sbjct: 197 GSASGSSSGLHSELMLADVRCPH 219


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 471 LRADRYPEAVMNSTQRDMERFLPSLSFKT 385
           L+ D +  +V+   + D+  FL SLSFKT
Sbjct: 608 LQMDCFEASVIECQKSDLGVFLESLSFKT 636


>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 78  LVPPEMMAAQSKLVYQMNKFYNERVANRKAQITKTIH 188
           LV P +     K+V   +KF   R   +K+ ++K IH
Sbjct: 12  LVKPALAKKPKKIVDNSDKFPTPRGFQQKSLVSKNIH 48


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 99  AAQSKLVYQMNKFYNERVANRKAQITKTI--HEVCR 200
           +AQS L YQ  KF +   AN    ITK +  H++ R
Sbjct: 342 SAQSYLRYQAKKFVSRFDANCYISITKKLDTHDITR 377


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 144 ERVANRKAQITKTIHEVCRIVQDVLKEVELQEP 242
           ER A+ K +I +TI E+ ++ QD+   V+ QEP
Sbjct: 186 ERHADIK-RIERTIAELAQLFQDMATMVQEQEP 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,486
Number of Sequences: 5004
Number of extensions: 41164
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)