Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20932
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869     30   1.6  
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...    29   2.7  
10_01_0250 - 2622738-2623328,2626525-2627169,2627701-2627754           28   6.3  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    28   6.3  
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    27   8.4  
02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101...    27   8.4  

>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
          Length = 664

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 78  LVPPEMMAAQSKLVYQMNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVELQ 236
           L+PP   AA S +  +  K    R    KAQI +  +++CR V+  L    LQ
Sbjct: 423 LLPPTPSAAVSPMQRKPTKPRRRRQLKLKAQIIRDQNKICRKVKAALDRYALQ 475


>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 341 GVLNFVDDGSLPGCAVL---KLSDGRKRSMSLWVEFITASGYLSARKIRSRFQ-TLVAQA 508
           GVL FV +    GC V+   KL   R +SM     ++ +SGY     I S  +  L+ Q 
Sbjct: 123 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQG 182

Query: 509 VTSARIEI 532
           V   +++I
Sbjct: 183 VLGIKVKI 190


>10_01_0250 - 2622738-2623328,2626525-2627169,2627701-2627754
          Length = 429

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 208 KMYSRRWSCRSRGSYPSHRLQRQVRR 285
           ++YSRR S  SRG  PS + +  +RR
Sbjct: 30  QVYSRRGSMSSRGRSPSSKARHAIRR 55


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 57   IPIQPPCLVPPEMMAAQSKLVYQ 125
            +PIQPP + PP + ++ S L YQ
Sbjct: 1201 LPIQPPPIPPPPVPSSPSSLGYQ 1223


>02_01_0399 -
           2905026-2905406,2905522-2905630,2905809-2907475,
           2907650-2907790,2907870-2908043,2908577-2908851,
           2909592-2909755,2910409-2910536,2910628-2910734,
           2911747-2911880,2912266-2912441,2912530-2914257,
           2915084-2915239,2915328-2915486,2915581-2915751,
           2915931-2916047,2916417-2916473,2916565-2916680,
           2916790-2916916,2917862-2917945
          Length = 2056

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 57  IPIQPPCLVPPEMMAAQSKLVYQMNKFYNERVANRKAQITKT 182
           +P+ P CL  PE    QS + Y ++    ++V  +  QI K+
Sbjct: 256 LPVPPNCLYIPEFTDGQSIMSYDISISLLKKVLQKIEQIKKS 297


>02_01_0141 +
           1017654-1017745,1018332-1018389,1018485-1018595,
           1018853-1018990,1019559-1019628,1019711-1019766,
           1020203-1020328,1020648-1020787,1020932-1021004,
           1021095-1021169,1021277-1021591
          Length = 417

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 200 DSARCTQGGGVAGAEVHIPLTDYNGRFDGLEVVSPHEFEI 319
           DS     GGG  G   H   TDY   +D ++V  P  FEI
Sbjct: 252 DSCLVGSGGGAVGYLAHGTTTDY--MYDIVKVPMPFTFEI 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,220,090
Number of Sequences: 37544
Number of extensions: 311795
Number of successful extensions: 1058
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)