Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20932
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                     127   8e-30
SB_55884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)                   29   2.8  
SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)           29   3.7  
SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  

>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score =  127 bits (306), Expect = 8e-30
 Identities = 59/91 (64%), Positives = 71/91 (78%)
 Frame = +2

Query: 257  LTDYNGRFDGLEVVSPHEFEIVIYLNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLWVE 436
            L   +GR+ GL VVSP  FE+ +YLNQMGV NF+DDG   GCA+LKLSD RKRSMSLW E
Sbjct: 1331 LKQLDGRYLGLYVVSPKRFEVCLYLNQMGVFNFIDDGCPSGCAMLKLSDERKRSMSLWTE 1390

Query: 437  FITASGYLSARKIRSRFQTLVAQAVTSARIE 529
            FITASGYLSARK+RSRF +LV +A+    ++
Sbjct: 1391 FITASGYLSARKMRSRFTSLVGEAIRRGNLQ 1421



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/43 (48%), Positives = 27/43 (62%)
 Frame = +3

Query: 126  MNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFIS 254
            M  F +  V  RK++  + I  VCR+V +VLK VE  EPRFIS
Sbjct: 1287 MKHFVSNIVHRRKSETYQAIANVCRVVPEVLKHVEALEPRFIS 1329


>SB_55884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 214 YSRRWSCRSRGSYPSHRLQRQVRRPRSGLAP 306
           ++R  +CR  G  P  +  R+ R PR+G AP
Sbjct: 193 HTRLTTCRPGGKAPLRKCTRRARLPRTGAAP 223


>SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)
          Length = 1106

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 217 SRRWSCRSRGSYPSHRLQRQVRRPRSGLAP-RVRDRH 324
           +R  +CR  G  P  +  R+ R PR+G AP   R RH
Sbjct: 221 TRLTTCRPGGRAPLRKCTRRARLPRTGAAPLPFRRRH 257


>SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)
          Length = 751

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 217 SRRWSCRSRGSYPSHRLQRQVRRPRSGLAP 306
           +R  +CR  G  P  +  R+ R PR+G AP
Sbjct: 303 TRLTTCRPGGKAPLRKCARRARLPRTGAAP 332


>SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1650

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 217 SRRWSCRSRGSYPSHRLQRQVRRPRSGLAP 306
           +R  +CR  G  P  +  R+ R PR+G AP
Sbjct: 242 TRLTTCRPGGKAPLRKCTRRARLPRTGAAP 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,892,683
Number of Sequences: 59808
Number of extensions: 326681
Number of successful extensions: 1017
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)