Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20932
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical pr...   138   4e-33
U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein ...   138   4e-33
Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    27   7.5  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    27   7.5  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      27   7.5  
Z82096-1|CAB05030.2|  229|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical
           protein F35G12.6 protein.
          Length = 364

 Score =  138 bits (333), Expect = 4e-33
 Identities = 64/80 (80%), Positives = 71/80 (88%)
 Frame = +2

Query: 272 GRFDGLEVVSPHEFEIVIYLNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITAS 451
           GRFDG+ V SP E+E V+YLNQMGV NFVDDG++ GCAVLKLSDGRKRSMSLWVEFITAS
Sbjct: 62  GRFDGIVVHSPSEYEAVLYLNQMGVFNFVDDGTIQGCAVLKLSDGRKRSMSLWVEFITAS 121

Query: 452 GYLSARKIRSRFQTLVAQAV 511
           GYLSARKIR RFQ +VAQ +
Sbjct: 122 GYLSARKIRHRFQNIVAQVL 141



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 31/61 (50%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = +3

Query: 93  MMAAQSKLVYQMNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFI-SLSPTT 269
           M+     +VYQ+N ++NE+V +RK ++TKT+  + ++VQ++LKEVE QEPRFI +LS TT
Sbjct: 1   MLGHNQNVVYQVNNYFNEKVQHRKVRVTKTVQRIAKVVQEILKEVEAQEPRFINTLSETT 60

Query: 270 T 272
           T
Sbjct: 61  T 61


>U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein
           protein.
          Length = 364

 Score =  138 bits (333), Expect = 4e-33
 Identities = 64/80 (80%), Positives = 71/80 (88%)
 Frame = +2

Query: 272 GRFDGLEVVSPHEFEIVIYLNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITAS 451
           GRFDG+ V SP E+E V+YLNQMGV NFVDDG++ GCAVLKLSDGRKRSMSLWVEFITAS
Sbjct: 62  GRFDGIVVHSPSEYEAVLYLNQMGVFNFVDDGTIQGCAVLKLSDGRKRSMSLWVEFITAS 121

Query: 452 GYLSARKIRSRFQTLVAQAV 511
           GYLSARKIR RFQ +VAQ +
Sbjct: 122 GYLSARKIRHRFQNIVAQVL 141



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 31/61 (50%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = +3

Query: 93  MMAAQSKLVYQMNKFYNERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFI-SLSPTT 269
           M+     +VYQ+N ++NE+V +RK ++TKT+  + ++VQ++LKEVE QEPRFI +LS TT
Sbjct: 1   MLGHNQNVVYQVNNYFNEKVQHRKVRVTKTVQRIAKVVQEILKEVEAQEPRFINTLSETT 60

Query: 270 T 272
           T
Sbjct: 61  T 61


>Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical
           protein R166.1 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -3

Query: 435 STQRDMERFLPSLSFKTAQPGSEPSSTKFSTPI*LR*MTISNSWGETTSRPSNLP 271
           S   D     PSL+  T    S P + KFSTP+ L  +        T+S  S LP
Sbjct: 139 SEAADTSSSSPSLNLNTTSSNSVPLAFKFSTPL-LESLASDQQSSSTSSVRSVLP 192


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 352 VQH-SHLIEIDDDLELVGRDHFEAVEPAVVVGERD 251
           V H  H  E+  D+  V   H+E V   ++VG+RD
Sbjct: 221 VDHCKHAFEMKSDMVCVNPYHYEIVIGTMIVGQRD 255


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 352 VQH-SHLIEIDDDLELVGRDHFEAVEPAVVVGERD 251
           V H  H  E+  D+  V   H+E V   ++VG+RD
Sbjct: 317 VDHCKHAFEMKSDMVCVNPYHYEIVIGTMIVGQRD 351


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 352 VQH-SHLIEIDDDLELVGRDHFEAVEPAVVVGERD 251
           V H  H  E+  D+  V   H+E V   ++VG+RD
Sbjct: 221 VDHCKHAFEMKSDMVCVNPYHYEIVIGTMIVGQRD 255


>Z82096-1|CAB05030.2|  229|Caenorhabditis elegans Hypothetical
           protein ZK909.3 protein.
          Length = 229

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 105 QSKLVYQMNKFYNERVANRKAQI---TKTIHEVCRIVQDVLKEVE 230
           Q+KLV+  +K YN R   RKA I    K ++E  +  ++V+ E++
Sbjct: 166 QAKLVHLADKLYNLRDLERKAPIGWDKKRVNEYFKWSREVIGEMK 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,921
Number of Sequences: 27780
Number of extensions: 238743
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)