Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20932
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   5.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 241  RGSYPSHRLQRQVRRPRSGLAPRVRDRHL 327
            RG    HR       P S L  +V++RHL
Sbjct: 1057 RGEMSVHRAGSYYGVPHSTLEYKVKERHL 1085


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 460 IGAQDTVALPNVGSSGRDKCSY 525
           I  QDTV + N+  SG++   Y
Sbjct: 189 IEEQDTVLVVNIEKSGKESKKY 210


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 220 RRWSCRSRGSYPSHRLQRQVRRPRSGLAPRVRDR 321
           +R+SC       S++ +   R+ R     R RDR
Sbjct: 270 KRYSCSREREQKSYKNENSYRKYRETSKERSRDR 303


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +3

Query: 60  PIQPPCLVPPEMMAAQSKLVYQMNKFYNERV 152
           P  PP   P +MM + +  ++QM +   + +
Sbjct: 52  PGAPPSQNPSQMMISPASGIHQMQQLLQQHI 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,273
Number of Sequences: 438
Number of extensions: 3364
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)