Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20932
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21830.1 68415.m02594 DC1 domain-containing protein contains ...    31   0.57 
At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containi...    29   1.7  
At3g29630.1 68416.m03726 glycosyltransferase family protein cont...    29   1.7  
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...    29   2.3  
At1g73430.1 68414.m08500 sec34-like family protein contains Pfam...    29   3.0  
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)              28   4.0  
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)              28   4.0  
At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH, chlor...    28   5.3  
At3g47710.1 68416.m05198 bHLH family protein                           28   5.3  
At5g43620.1 68418.m05332 S-locus protein-related contains some s...    27   9.3  

>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
           Pfam profilePF03107: DC1 domain
          Length = 569

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 391 QDGAARERAVVHEVQHSHLIEIDDDLELVGRDHFEAVEPAVV 266
           Q+     + +VH++ H+H++   D  EL G++H    E  ++
Sbjct: 375 QEDYETNKVMVHDINHNHVVTSIDMCELEGKEHCHICEKEIL 416


>At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 581

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -1

Query: 587 YLSR-IRNLTSVVSAIIF-TQSLYEHLSRPELPTFGSATVSCAPI-GIPK 447
           YL R   N +S +++I+F  + L   +SRP+L TF  A  SC  I  IPK
Sbjct: 76  YLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPK 125


>At3g29630.1 68416.m03726 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 448

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 442 HRFGIPIGAQDTVALPNVGSSGRDKCSYRDCVKMIAETTEVKLR 573
           H  G+P+GA+ T  LPN  SS R      D + ++ E  EVK+R
Sbjct: 66  HVDGLPVGAETTADLPN--SSKR---VLADAMDLLREQIEVKIR 104


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 341 GVLNFVDDGSLPGCAVL---KLSDGRKRSMSLWVEFITASGYLSARKIRSRFQ-TLVAQA 508
           GVL FV +    GC V+   KL   R +SM     ++ +SG  +   I S  +  L+ Q 
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180

Query: 509 VTSARIEI 532
           V   ++++
Sbjct: 181 VLGIKVKV 188


>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
           PF04136: Sec34-like family profile; similar to Conserved
           oligomeric Golgi complex component 3 (Vesicle docking
           protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
           sapiens]
          Length = 784

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 250 YPSHRLQRQVRRPRSGLAPRVRDRHLSQS 336
           +P++ +   V RP +GL+  V D HL  S
Sbjct: 53  FPANLVHEHVHRPENGLSVSVEDTHLGDS 81


>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 341 GVLNFVDDGSLPGCAVL---KLSDGRKRSMSLWVEFITASGYLSARKIRSRFQ-TLVAQA 508
           GVL FV +    GC V+   KL   R +SM     ++ +SG  +   I +  +  L+ Q 
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 509 VTSARIEI 532
           V   +++I
Sbjct: 181 VLGLKVKI 188


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 341 GVLNFVDDGSLPGCAVL---KLSDGRKRSMSLWVEFITASGYLSARKIRSRFQ-TLVAQA 508
           GVL FV +    GC V+   KL   R +SM     ++ +SG  +   I +  +  L+ Q 
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 509 VTSARIEI 532
           V   +++I
Sbjct: 181 VLGIKVKI 188


>At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH,
            chloroplast, putative / Mg-protoporphyrin IX chelatase,
            putative (CHLH) nearly identical to magnesium chelatase
            subunit GI:1154627 from [Arabidopsis thaliana]; contains
            Pfam profile: PF02514 CobN/magnesium chelatase family
            protein
          Length = 1381

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 428  WVEFITASGYLSARKIRSRFQTLVAQAVTSARIE 529
            W E + +SGY   R+I  R    V  + TS +++
Sbjct: 1277 WYEGMMSSGYEGVREIEKRLSNTVGWSATSGQVD 1310


>At3g47710.1 68416.m05198 bHLH family protein 
          Length = 92

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 114 LVYQMNKFYNERVANR---KAQITKTIHEVCRIVQDVLKEVELQEPRFISLSPTTTAGST 284
           LV Q+++   E   NR   K   ++ + E C  ++++ KEV+    R   L  +T +   
Sbjct: 24  LVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTDSAQA 83

Query: 285 A 287
           A
Sbjct: 84  A 84


>At5g43620.1 68418.m05332 S-locus protein-related contains some
           similarity to S-locus protein 4 GI:6069478 from
           [Brassica rapa]
          Length = 410

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 430 PEGHGTLPPVAQFQDGAARERAVVHEVQHSHLIEIDDD 317
           P G GT+  VA F  G  +++    +VQ  H++  D+D
Sbjct: 303 PTGGGTVE-VASFGGGEMQKKNEKDQVQKQHMVPADED 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,685,562
Number of Sequences: 28952
Number of extensions: 229208
Number of successful extensions: 713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)