Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20931
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    91   7e-21
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   1.1  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   6.0  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   7.9  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 91.5 bits (217), Expect = 7e-21
 Identities = 43/82 (52%), Positives = 58/82 (70%)
 Frame = +3

Query: 3   DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
           DMGF   + +++   +MP TGERQTLMFSATFP+++Q LA  FL NY+F+AVG VGS   
Sbjct: 323 DMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACT 382

Query: 183 NITQKVVWVDEMDKRSFLLDLL 248
           ++ QK   V + DKRS L+ +L
Sbjct: 383 DVEQKFFQVSKFDKRSKLVSIL 404



 Score = 87.0 bits (206), Expect = 1e-19
 Identities = 49/88 (55%), Positives = 59/88 (67%)
 Frame = +2

Query: 245 TKCTNLLQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRR 424
           +K  ++L++A P E  LI  FVETK+ AD L  +L  Q    TSIHGDR Q ERE AL  
Sbjct: 398 SKLVSILEKA-PNERTLI--FVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLD 454

Query: 425 FRTGQTPILVATAVAARGLDIPHVRHVI 508
           F+TG   +LVAT VAARGLDI  V+HVI
Sbjct: 455 FKTGHRKVLVATGVAARGLDIKDVQHVI 482



 Score = 84.2 bits (199), Expect = 1e-18
 Identities = 37/60 (61%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = +1

Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFN-DTNRGLARDLVELLVEAKQDVPNWLTS 684
           N+DLP  ++EYVHRIGRTGR+GN G ATSFF+ D +R LA DL ++L +AKQ++P WL S
Sbjct: 483 NYDLPKSIDEYVHRIGRTGRVGNKGKATSFFDEDQDRNLASDLAKILSQAKQEIPEWLGS 542


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 457 NSCRCKRPRHTARTSRNNFDLPSDVEEYVHRIGRTGRMGNLGVATS 594
           N C  K PRH     + N+ +     E V   G TG++     A S
Sbjct: 138 NKCFVKVPRHYDDPGKGNYWMLDPSAEDVFIGGTTGKLRRRSTAAS 183


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 131 LIQLCVPCCWTCRLNV 178
           LI L V CCW   L++
Sbjct: 6   LIYLIVACCWGKSLSI 21


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 83  VFCHFPKTDSTFGSGFLIQLCVP 151
           V+ H PKT +      LIQ   P
Sbjct: 310 VYGHIPKTQTNIAIATLIQSLAP 332


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,321
Number of Sequences: 336
Number of extensions: 3439
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)