Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20931
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 124 1e-29
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 81 2e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 73 6e-14
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 63 5e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 61 1e-10
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 61 1e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 4e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 8e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 57 2e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 56 7e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 56 7e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 49 6e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 47 2e-06
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 47 3e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 46 7e-06
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 46 7e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 45 1e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 42 9e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 4e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 39 7e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 38 0.001
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 37 0.003
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 37 0.003
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 37 0.003
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 36 0.005
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 35 0.011
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 33 0.056
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 33 0.056
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.056
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.056
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 31 0.13
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.70
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 2.1
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 2.8
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 2.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.7
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 26 6.5
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 25 8.6
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 124 bits (300), Expect = 1e-29
Identities = 61/83 (73%), Positives = 71/83 (85%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
DMGFEPQIR IVE M ERQTLMFSATFP+ IQLLA+DFL +YVFL+VGRVGSTSE
Sbjct: 343 DMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSE 402
Query: 183 NITQKVVWVDEMDKRSFLLDLLN 251
NITQKVV V++ +KRS+LLD+L+
Sbjct: 403 NITQKVVHVEDSEKRSYLLDILH 425
Score = 101 bits (243), Expect = 8e-23
Identities = 48/72 (66%), Positives = 58/72 (80%)
Frame = +2
Query: 293 LILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAA 472
L L+FVETK+ AD L +YL + +P TSIHGDR QRERE AL FR+G+T I+VATAVA+
Sbjct: 432 LTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVAS 491
Query: 473 RGLDIPHVRHVI 508
RGLDIP+V HVI
Sbjct: 492 RGLDIPNVTHVI 503
Score = 86.2 bits (204), Expect = 4e-18
Identities = 35/63 (55%), Positives = 51/63 (80%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTST 687
N+DLP+D+++YVHRIGRTGR GN G A +FFN N+G+A++L+ELL EA Q+ P++L +
Sbjct: 504 NYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAM 563
Query: 688 AAD 696
A +
Sbjct: 564 ARE 566
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 80.6 bits (190), Expect = 2e-16
Identities = 34/81 (41%), Positives = 53/81 (65%)
Frame = +2
Query: 263 LQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQT 442
++ + D +L+F TK+ AD + +L G+P +IHGD+ Q ER+ L FRTG++
Sbjct: 361 IEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKS 420
Query: 443 PILVATAVAARGLDIPHVRHV 505
PI+VAT VA+RG+D+ + HV
Sbjct: 421 PIMVATDVASRGIDVKGITHV 441
Score = 74.5 bits (175), Expect = 1e-14
Identities = 42/79 (53%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVG-STS 179
DMGFEPQIRKIV+ P +RQT+MFSAT+PK++Q LA+D+L +Y+ + VG + + S
Sbjct: 283 DMGFEPQIRKIVD-QIRP---DRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAAS 338
Query: 180 ENITQKVVWVDEMDKRSFL 236
NI Q V VD DKR+ L
Sbjct: 339 HNIKQIVEVVDNADKRARL 357
Score = 66.5 bits (155), Expect = 4e-12
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDV 666
N+D P + E+YVHRIGRTGR G G A ++F N AR+LV +L EAKQD+
Sbjct: 443 NYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDI 495
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 72.5 bits (170), Expect = 6e-14
Identities = 41/82 (50%), Positives = 55/82 (67%)
Frame = +2
Query: 284 EDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATA 463
+D IL+FV KK A ++E L ++ Y V IHGD +Q R AL F++G+ P+LVAT
Sbjct: 416 KDDKILIFVLYKKEAARVEGTL-ARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATD 474
Query: 464 VAARGLDIPHVRHVIILIYHLT 529
VAARGLDIP V+ VI + + LT
Sbjct: 475 VAARGLDIPKVQLVINVTFPLT 496
Score = 59.7 bits (138), Expect = 4e-10
Identities = 27/57 (47%), Positives = 36/57 (63%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWL 678
N P +E+YVHRIGRTGR G A +FF ++ A +LV +L +AKQD+P L
Sbjct: 490 NVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGL 546
Score = 55.2 bits (127), Expect = 9e-09
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKT--GERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVG-S 173
D GFE IR I+ HT T G RQT+ FSAT+P+ ++ LA FL + V + +G +
Sbjct: 323 DTGFEQDIRNIIS-HTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELA 381
Query: 174 TSENITQKVVWVDEMDKRSFLLDLL 248
S+NITQ V +D+ + +LD L
Sbjct: 382 ASQNITQIVEILDDPRSKERMLDNL 406
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 62.9 bits (146), Expect = 5e-11
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
LVFV TK + + E L GY V+ I+G +Q R + + FR G+T +LV T VA+RG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 479 LDIPHVRHVI 508
+DIP + +VI
Sbjct: 410 IDIPLLANVI 419
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDL 633
N+D P + +VHR+GRT R G G A S + G DL
Sbjct: 420 NYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDL 461
Score = 35.5 bits (78), Expect = 0.008
Identities = 24/82 (29%), Positives = 43/82 (52%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
+MGF Q+ +I+ H +P + RQTL+FSAT P+ + A+ L + V + + S
Sbjct: 227 EMGFAAQLTEIL--HALPTS--RQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSA 282
Query: 183 NITQKVVWVDEMDKRSFLLDLL 248
++ V ++ + LL +L
Sbjct: 283 DLQSAFFSVKTAEREAALLCIL 304
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 61.3 bits (142), Expect = 1e-10
Identities = 28/74 (37%), Positives = 46/74 (62%)
Frame = +2
Query: 287 DQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAV 466
D LVFV+ ++ AD L L +GY SIHG ++Q +R+ + ++ G +L+AT+V
Sbjct: 668 DVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSV 727
Query: 467 AARGLDIPHVRHVI 508
ARGLD+ ++ V+
Sbjct: 728 VARGLDVKSLQLVV 741
Score = 60.1 bits (139), Expect = 3e-10
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTST 687
N+D P+ +E+YVHR+GRTGR G+ GVA +F A D+ + L +KQ VP L +
Sbjct: 742 NYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTL 801
Query: 688 AA 693
A+
Sbjct: 802 AS 803
Score = 52.0 bits (119), Expect = 9e-08
Identities = 32/82 (39%), Positives = 48/82 (58%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
D+GFEPQ+ +I+ + P +RQT++FSATFP+ ++ LA+ L V + VG +
Sbjct: 582 DLGFEPQVMRIIN-NIRP---DRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVAS 637
Query: 183 NITQKVVWVDEMDKRSFLLDLL 248
+ Q V E K S LL+LL
Sbjct: 638 EVEQIVEVRPEESKFSRLLELL 659
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/70 (38%), Positives = 44/70 (62%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F T++ D L E L + + V+S+HGD +Q +R+ + FRTG + IL+ T + ARG
Sbjct: 262 VIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARG 321
Query: 479 LDIPHVRHVI 508
+D+ V VI
Sbjct: 322 IDVQQVSLVI 331
Score = 46.4 bits (105), Expect = 4e-06
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 669
N+DLP++ E Y+HRIGR GR G GV+ +F + + + R++ + +++P
Sbjct: 332 NYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMP 385
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 59.7 bits (138), Expect = 4e-10
Identities = 26/71 (36%), Positives = 45/71 (63%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
I++FV K+ + + + L + G+ ++HG ++Q +RE A+ + R ILVAT +A R
Sbjct: 519 IIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGR 578
Query: 476 GLDIPHVRHVI 508
G+DIP+V V+
Sbjct: 579 GIDIPNVSLVL 589
Score = 46.4 bits (105), Expect = 4e-06
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +3
Query: 60 TGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKR 227
+ RQT+MFSAT P ++ LA+ +L V L +G +G + + Q+V + + K+
Sbjct: 447 SSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKK 502
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLV-EAKQDVPNWLTS 684
N+++ +E+Y HRIGRTGR G G A +F + + DL LL AK +P+ L +
Sbjct: 590 NYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRN 649
Query: 685 TAA 693
A
Sbjct: 650 HEA 652
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 58.8 bits (136), Expect = 8e-10
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +2
Query: 221 QAFLFIGFT-KCTNLLQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQ 397
Q +LF F K T L+ I++F T +L L + G+ +HG +Q
Sbjct: 262 QRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQ 321
Query: 398 REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVI 508
R AL +F++G LVAT VAARGLDIP V VI
Sbjct: 322 SNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVI 358
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/83 (33%), Positives = 48/83 (57%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
DM F P I KI++ +P ER+TL+FSAT +++ L + L+ V +AV ST +
Sbjct: 203 DMDFGPIIDKILKI--IPH--ERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVD 258
Query: 183 NITQKVVWVDEMDKRSFLLDLLN 251
+ Q+ ++ K ++L+ L+N
Sbjct: 259 TLIQRYLFFPFKHKDTYLVYLVN 281
Score = 38.7 bits (86), Expect = 9e-04
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLG 582
N+D+P+D + Y+HR+GRT R G G
Sbjct: 359 NYDIPTDSKAYIHRVGRTARAGRAG 383
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWL 678
NFD P V Y+HRIGRTGR GN G A +FF + + + ++ + +VPNW+
Sbjct: 362 NFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWV 418
Score = 52.0 bits (119), Expect = 9e-08
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Frame = +2
Query: 221 QAFLFIGFTKCTNLLQRARPEEDQL---ILVFVETKKGADQLEEYLYSQGYPVTSIHGDR 391
Q LF+G ++ R +L +++FV+ + A L L V IHG+
Sbjct: 263 QRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGEL 322
Query: 392 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVI 508
Q +RE+AL +FR G+ +L+AT + ARG+D V+ VI
Sbjct: 323 PQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVI 361
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/43 (27%), Positives = 28/43 (65%)
Frame = +3
Query: 81 MFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSENITQKVVWV 209
+FSAT P +++ LA+ + + + VG + +++I Q++++V
Sbjct: 226 LFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFV 268
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 55.6 bits (128), Expect = 7e-09
Identities = 31/70 (44%), Positives = 42/70 (60%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++FV + A+ + L VT +H + QRER ++L RFR ILVAT VA+RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 479 LDIPHVRHVI 508
LDIP V+ VI
Sbjct: 322 LDIPSVQLVI 331
Score = 42.3 bits (95), Expect = 7e-05
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFND 606
NFDLP D ++Y+HR+GRT R G G + S +
Sbjct: 332 NFDLPRDPDDYIHRVGRTARAGRSGESISIVTE 364
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 55.6 bits (128), Expect = 7e-09
Identities = 24/70 (34%), Positives = 43/70 (61%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F +++ D L E + + VTS+HG+ Q+ER+ ++ FR G + +L+ T + ARG
Sbjct: 264 VIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARG 323
Query: 479 LDIPHVRHVI 508
+D+ V VI
Sbjct: 324 IDVQQVSLVI 333
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 669
N+DLP++ E Y+HRIGR+GR G GVA +F + + + RD+ + ++P
Sbjct: 334 NYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMP 387
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 49.2 bits (112), Expect = 6e-07
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
+VF + ++ +L P +H +Q++R +L +F+ +LV T VAARG
Sbjct: 393 MVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARG 452
Query: 479 LDIPHVRHVI 508
+DIP V HVI
Sbjct: 453 IDIPSVTHVI 462
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 21 QIRKIVECHTMPKTGERQTLMFSATFPKQIQ 113
++ K++E P +RQT +FSATF + +Q
Sbjct: 288 ELSKLLEILGNPMHTQRQTFIFSATFDEGLQ 318
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVA 588
++ +P + YVHR GRT R GV+
Sbjct: 463 HYHVPHTADMYVHRSGRTARANEDGVS 489
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
++VF+ + + E L PV +HG + Q+ R + F + IL+ T VAAR
Sbjct: 339 VIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAAR 398
Query: 476 GLDIPHVRHVI 508
GLDIP V ++
Sbjct: 399 GLDIPAVDWIV 409
Score = 39.9 bits (89), Expect = 4e-04
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYN---YVFLAVGRVGS 173
++GFE ++R+I++ +P RQTL+FSAT +++ LA+ L YV + G+ S
Sbjct: 250 EIGFEDEMRQIMKI--LPSEN-RQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTS 306
Query: 174 TSENITQKVVWVDEMDKRSFLL 239
T E + Q V VD DKR LL
Sbjct: 307 TVEGLEQGYVVVDS-DKRFLLL 327
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 511 FDLPSDVEEYVHRIGRTGRMGNLGVATS 594
+D P D +Y+HR+GRT R G G S
Sbjct: 411 YDPPDDPRDYIHRVGRTAR-GTKGTGKS 437
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 46.8 bits (106), Expect = 3e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNR 615
NFD P + E Y+HRIGR+GR G+ G+A SF + +R
Sbjct: 355 NFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADR 390
Score = 31.5 bits (68), Expect = 0.13
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F + + L + + GY H Q R FR G LV + + RG
Sbjct: 285 IIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRG 344
Query: 479 LDIPHVRHVI 508
+DI V VI
Sbjct: 345 IDIQAVNVVI 354
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 45.6 bits (103), Expect = 7e-06
Identities = 25/70 (35%), Positives = 37/70 (52%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F +K A ++ T IHG +Q +R AL FR G+ L+AT VA+RG
Sbjct: 508 IIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRG 567
Query: 479 LDIPHVRHVI 508
+DI + VI
Sbjct: 568 IDIKGIEVVI 577
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNR 615
N++ P+ E Y+HR+GRT R G G A + + +R
Sbjct: 578 NYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDR 613
Score = 29.9 bits (64), Expect = 0.40
Identities = 21/67 (31%), Positives = 38/67 (56%)
Frame = +3
Query: 9 GFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSENI 188
GF ++ +I++ PK+ RQT++FSAT ++ L + L V + V +T++ +
Sbjct: 421 GFADELNEIIQA--CPKS--RQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLL 476
Query: 189 TQKVVWV 209
TQ+ V V
Sbjct: 477 TQEFVRV 483
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 45.6 bits (103), Expect = 7e-06
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+++FV++ A++L+ L +P IHG Q ER + F+ I VAT V R
Sbjct: 298 VVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGR 357
Query: 476 GLDIPHVRHVI 508
G+DI V VI
Sbjct: 358 GIDIERVNIVI 368
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSF 597
N+D+P + Y+HR+GR GR G G+A +F
Sbjct: 369 NYDMPDSPDSYLHRVGRAGRFGTKGLAITF 398
Score = 30.3 bits (65), Expect = 0.30
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 66 ERQTLMFSATFPKQIQLLAQDFLYNYVFLAV-GRVGSTSENITQKVVWVDEMDKRSFLLD 242
++Q +MFSAT +I+ + + F+ N + + V T + Q V ++E K + D
Sbjct: 229 QKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKIND 288
Query: 243 LLNA 254
LL++
Sbjct: 289 LLDS 292
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 45.2 bits (102), Expect = 1e-05
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSF 597
NFD+PS+ + Y+HRIGRT R G G A SF
Sbjct: 400 NFDMPSNTKSYIHRIGRTARAGKPGTAMSF 429
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 41.9 bits (94), Expect = 9e-05
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Frame = +2
Query: 248 KCTNLLQRARPEEDQL-ILVFVETKKGADQLEEYLYSQGYPVTSIH-----GDRNQ---- 397
K LL+ + D + ++FVE K A L ++ + P H G +Q
Sbjct: 347 KLLELLKATYRKSDSVRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFS 406
Query: 398 ---REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVI 508
R ++D L +F+TG+ +L+ATAVA G+D+P VI
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVI 446
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 6/39 (15%)
Frame = +1
Query: 508 NFDLP------SDVEEYVHRIGRTGRMGNLGVATSFFND 606
N+D+P D + Y+HRIGRTGR G +GV+ +F +D
Sbjct: 426 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHD 464
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 39.1 bits (87), Expect = 7e-04
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +2
Query: 242 FTKCTNLLQRARPEE-DQLILVFVETKKGADQLEEYLYSQ-GYPVTSIHGDRNQREREDA 415
F+ +LLQ+ I+VF+ T D + L + P +H +R
Sbjct: 276 FSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSI 335
Query: 416 LRRFRTGQTPILVATAVAARGLDIPHVRHVI 508
FR Q+ IL AT V ARG+D P++ V+
Sbjct: 336 TESFRKCQSGILFATDVVARGMDFPNITQVV 366
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 520 PSDVEEYVHRIGRTGRMGNLGVA 588
PS+ ++Y+HRIGRTGR G G A
Sbjct: 371 PSNTDDYIHRIGRTGRAGKTGEA 393
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQI 110
DMGF I I E T KT + L FSAT P ++
Sbjct: 202 DMGFAESILNIHEAVTTTKT---RKLCFSATMPPKV 234
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 350 YSQGYPVTSIHGDRNQREREDALRRFR-TGQTPILVATAVAARGLDIPHVRHVIIL 514
Y + + ++HG + Q R +F+ + + +L T +A+RGLDIP+V V+ L
Sbjct: 279 YKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQL 334
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 514 DLPSDVEEYVHRIGRTGRMGNLGVATSFFND 606
D P D + + HR GR GR G GVA ND
Sbjct: 335 DPPLDPKSFSHRCGRAGRAGRAGVAIVLLND 365
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 359 GYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVII 511
G ++ G+ N ERE ++ FR + P+LV V G DIP++ ++I
Sbjct: 289 GIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLMI 339
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 359 GYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVIIL 514
G + +HG + Q R + +F + + +L T + ARGLD P V VI L
Sbjct: 309 GISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQL 360
Score = 35.5 bits (78), Expect = 0.008
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAV--GRVGST 176
DMGF + IV ++P RQT++FSAT K ++ LA+ L N F++V ST
Sbjct: 199 DMGFRTTLDAIVS--SLPV--HRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSST 254
Query: 177 SENITQKVVWVDEMDKRSFLLDLL 248
N+ Q + V +K L +
Sbjct: 255 PSNLNQFYLTVPLTEKLDILFGFI 278
Score = 33.9 bits (74), Expect = 0.024
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 514 DLPSDVEEYVHRIGRTGRMGNLGVA 588
D P DV+ Y+HR+GRT R G A
Sbjct: 361 DAPEDVDTYIHRVGRTARYNRSGNA 385
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVA 588
N+D P V YVHRIGRT R G G A
Sbjct: 511 NYDPPLSVRSYVHRIGRTARAGREGFA 537
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 511 FDLPSDVEEYVHRIGRTGRMGNLGVATSF 597
+D P ++Y+HRIGRT R G+ G A F
Sbjct: 521 YDAPFSTDDYLHRIGRTARAGHNGAAIMF 549
Score = 35.5 bits (78), Expect = 0.008
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 368 VTSIHGDRNQREREDALRRFRTGQ---TPILVATAVAARGLDIPHVRHVI 508
V +HG +Q+ R L F + + + IL+ T VAARGLD+P+V V+
Sbjct: 470 VYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVV 519
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 35.1 bits (77), Expect = 0.011
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Frame = +2
Query: 284 EDQLILVFVETKKGADQLEEYL---YSQGYPVTSIH-------GDRNQREREDALRRFRT 433
+D I++FVE + A+++ +L Y P I +Q+ + + +++F+
Sbjct: 431 KDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQK 490
Query: 434 GQTPILVATAVAARGLDIPHVRHVI 508
G+ L+AT++ GLDI V +I
Sbjct: 491 GEVNTLIATSIGEEGLDIGEVDMII 515
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 32.7 bits (71), Expect = 0.056
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 260 LLQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQ 439
LL R R + +L+F + + D L +YL +GYP + G R ++ F
Sbjct: 698 LLSRLR-RDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPN 756
Query: 440 TPILV-ATAVAARGLDIPHVRHVIILIYHLTW 532
+P V + A GL I + ++I+ W
Sbjct: 757 SPDFVFLLSTRAGGLGINLMTADTVIIFDSDW 788
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 32.7 bits (71), Expect = 0.056
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +1
Query: 175 RQKILHRRLFG*TKWTSVPFYWIY*MHKLATTCTSRRGSTYTCVCGN*ERCGSTRRIFIF 354
++KIL + G + +V FY IY + C S R + G+T +++F
Sbjct: 15 KKKILELTVSGVSDLNAVYFYLIYTKSNSSLNCESLRPILSDLQESEFKPDGTT-MVYVF 73
Query: 355 PRLPGNIDPW 384
PR PG I PW
Sbjct: 74 PR-PGTISPW 82
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 32.7 bits (71), Expect = 0.056
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 LLQRARP-EEDQLILVFVETKKGADQLEEYLYSQGY----PVTSIHGDRNQREREDALRR 424
L++R + E D ++F TKK + + L+ VT GD + ER+
Sbjct: 1405 LMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDA 1464
Query: 425 FRT--GQTPILVATAVAARGLDIPHVRHVI 508
FR G+T I++AT G++ VR V+
Sbjct: 1465 FRNANGKTRIMIATKAFGLGINYMGVRLVV 1494
Score = 30.3 bits (65), Expect = 0.30
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 81 MFSATFPKQIQLLA-QDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFLLDL 245
+ SATFP+Q++++A Q F N F + + ENI ++ D FLLDL
Sbjct: 1352 LLSATFPRQLEMVARQTFCTN--FYVLRETSTARENI---FYFLHPYDNTEFLLDL 1402
Score = 28.7 bits (61), Expect = 0.92
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFF 600
++ LP+ +YV GR GR G +A F+
Sbjct: 1495 HYGLPASSMDYVQETGRAGRDGKYAIAALFY 1525
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 32.7 bits (71), Expect = 0.056
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 LLQRARP-EEDQLILVFVETKKGADQLEEYLYSQGY----PVTSIHGDRNQREREDALRR 424
L++R + E D ++F TKK + + L+ VT GD + ER+
Sbjct: 1405 LMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDA 1464
Query: 425 FRT--GQTPILVATAVAARGLDIPHVRHVI 508
FR G+T I++AT G++ VR V+
Sbjct: 1465 FRNANGKTRIMIATKAFGLGINYMGVRLVV 1494
Score = 30.3 bits (65), Expect = 0.30
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 81 MFSATFPKQIQLLA-QDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFLLDL 245
+ SATFP+Q++++A Q F N F + + ENI ++ D FLLDL
Sbjct: 1352 LLSATFPRQLEMVARQTFCTN--FYVLRETSTARENI---FYFLHPYDNTEFLLDL 1402
Score = 28.7 bits (61), Expect = 0.92
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFF 600
++ LP+ +YV GR GR G +A F+
Sbjct: 1495 HYGLPASSMDYVQETGRAGRDGKYAIAALFY 1525
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 392 NQREREDALRRFRTGQTPILVATAVAARGLDI 487
NQ ++++ + +FR G LVAT++ GLDI
Sbjct: 516 NQMQQKETIDQFRAGVINTLVATSIGEEGLDI 547
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.1 bits (62), Expect = 0.70
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 380 HGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVIIL 514
H N+R R+ FR GQ +++AT + G+++P R V+ L
Sbjct: 1229 HSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMP-CRTVVFL 1272
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 302 VFVETKKGADQLEEYLYSQGYPVTSIHGDRNQRERE 409
+F T++ AD +LY Y +TS + D+ ERE
Sbjct: 1134 IFSMTQREADNFGRFLYEVLYDITSWYRDKILYERE 1169
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.1 bits (57), Expect = 2.8
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +2
Query: 260 LLQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQ 439
LLQR + + +L+F + + + L EY+ +GY + G R ++ F
Sbjct: 712 LLQRLK-HDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPD 770
Query: 440 TP---ILVATAVAARGLDIPHVRHVII 511
+P L++T G+++ VII
Sbjct: 771 SPDFVFLLSTRAGGLGINLNTADTVII 797
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 167 RLNVRKYYTEGCLGRRNGQAFLFIGFTKCTNLLQRARPEEDQLILVFVETKKGADQ 334
RL++ Y C+G R Q G + CT ++ P + ++ ++K DQ
Sbjct: 1003 RLHIAGDYIFSCVGCRTLQRSFLSGLSVCTGIIDSLAPISLTIPIIGETSRKELDQ 1058
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQ-GYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+++ ++ +Q+ L + G H + ER+ +++G I+VAT
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 476 GLDIPHVRHVI 508
G+D VR VI
Sbjct: 806 GVDKGDVRFVI 816
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 272 ARPEEDQLILVFVETKKGADQLEEYLYSQGYPV-TSIHGDRNQREREDALRR 424
AR E + + K GA Q E + Q T + R +ER++ LRR
Sbjct: 486 ARHELGESFFDWEAAKVGAPQSREQIQKQRQKAKTKLENQRRDKERQEELRR 537
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 222 KRSFLLDLLNAQTCYNVHVPKRINLYLCLWKLRKVRIN*KNI-YIPK 359
+R+F + Q +NV +PK +NL L LRK N +++ Y+ K
Sbjct: 424 ERNFADSIKLLQAHFNVDMPKLLNLTFELQHLRKTSKNDEDMSYVRK 470
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,555
Number of Sequences: 5004
Number of extensions: 56068
Number of successful extensions: 228
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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