Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20931
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       90   2e-20
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 90.2 bits (214), Expect = 2e-20
 Identities = 45/70 (64%), Positives = 53/70 (75%)
 Frame = +2

Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
           LVFVE KK AD +  +L    YP TSIHGDR QR+RE+AL  F++G+  ILVATAVAARG
Sbjct: 455 LVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARG 514

Query: 479 LDIPHVRHVI 508
           LDI +V HVI
Sbjct: 515 LDIKNVSHVI 524



 Score = 83.8 bits (198), Expect = 2e-18
 Identities = 42/85 (49%), Positives = 54/85 (63%)
 Frame = +3

Query: 3   DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
           DMGF P I K+V+  TM   GERQTLMFSATFP ++Q LA+ FL NY+FLAVG VG    
Sbjct: 361 DMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACS 420

Query: 183 NITQKVVWVDEMDKRSFLLDLLNAQ 257
           ++ Q    V    K+  L ++L  +
Sbjct: 421 DVEQNFYEVARNKKKDLLKEILERE 445



 Score = 73.7 bits (173), Expect = 2e-15
 Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
 Frame = +1

Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFN-DTNRGLARDLVELLVEAKQDVPNWL 678
           N+DLP  ++EYVHRIGRTGR+GN G ATSFF+ + +  L  DLV +L +A Q VP+W+
Sbjct: 525 NYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQSVPDWM 582


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 122 SGFLIQLCVPCC 157
           S +LIQ+ +PCC
Sbjct: 242 SYYLIQIYIPCC 253


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 122 SGFLIQLCVPCC 157
           S +LIQ+ +PCC
Sbjct: 242 SYYLIQIYIPCC 253


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 135 YNYVFLAVGRVGSTSENITQK--VVWVDEMDKRSFLLDLLNAQTCYN 269
           YN V +     GS S N  ++  V  V +    + L DL N ++C++
Sbjct: 452 YNTVPIIAESYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHS 498


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 135 YNYVFLAVGRVGSTSENITQK--VVWVDEMDKRSFLLDLLNAQTCYN 269
           YN V +     GS S N  ++  V  V +    + L DL N ++C++
Sbjct: 452 YNTVPIIAESYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHS 498


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 135 YNYVFLAVGRVGSTSENITQK--VVWVDEMDKRSFLLDLLNAQTCYN 269
           YN V +     GS S N  ++  V  V +    + L DL N ++C++
Sbjct: 452 YNTVPIIAESYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHS 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,521
Number of Sequences: 438
Number of extensions: 3714
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)