Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20931
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 122 3e-28
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 122 3e-28
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 118 4e-27
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 118 5e-27
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 86 2e-17
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 82 4e-16
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 77 1e-14
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 77 2e-14
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 75 4e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 75 5e-14
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 75 5e-14
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 75 5e-14
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 73 2e-13
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 73 3e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 72 5e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 69 3e-12
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 66 2e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 66 3e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 65 5e-11
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 64 1e-10
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 63 2e-10
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 63 2e-10
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 62 5e-10
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 62 5e-10
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 58 5e-09
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 58 5e-09
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 58 5e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 58 5e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 56 2e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 56 2e-08
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 54 1e-07
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 53 2e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 52 3e-07
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 52 4e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 50 2e-06
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 49 3e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 49 3e-06
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 49 4e-06
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 49 4e-06
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 49 4e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 9e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 46 3e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 46 3e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 46 3e-05
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 45 5e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 44 1e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 44 1e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 43 2e-04
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 43 2e-04
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 43 2e-04
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 43 2e-04
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 43 2e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 42 3e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 42 4e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 41 0.001
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 41 0.001
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 40 0.001
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 40 0.001
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 40 0.001
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 40 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 0.001
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 40 0.002
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 40 0.002
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 39 0.004
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 38 0.005
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 38 0.005
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica... 38 0.007
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 37 0.012
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 37 0.012
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 37 0.016
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 36 0.021
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 36 0.028
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 34 0.11
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 34 0.11
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 32 0.35
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 31 0.80
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 31 0.80
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 31 0.80
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 31 0.80
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 31 0.80
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 31 1.1
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 31 1.1
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 30 1.4
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 30 1.9
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 29 2.4
At4g20850.1 68417.m03025 subtilase family protein contains simil... 29 3.2
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 29 4.3
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 29 4.3
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 29 4.3
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 28 5.7
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 28 5.7
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 28 5.7
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 28 7.5
At5g40855.1 68418.m04961 hypothetical protein 27 9.9
At2g38860.2 68415.m04775 proteaseI (pfpI)-like protein (YLS5) co... 27 9.9
At2g38860.1 68415.m04774 proteaseI (pfpI)-like protein (YLS5) co... 27 9.9
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 122 bits (293), Expect = 3e-28
Identities = 59/85 (69%), Positives = 70/85 (82%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
DMGFEPQIRKIVE MP G RQT++FSATFP QIQ LA DF+ NY+FLAVGRVGS+++
Sbjct: 317 DMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTD 376
Query: 183 NITQKVVWVDEMDKRSFLLDLLNAQ 257
ITQ+V +V E DKRS L+DLL+AQ
Sbjct: 377 LITQRVEFVQESDKRSHLMDLLHAQ 401
Score = 113 bits (272), Expect = 1e-25
Identities = 54/81 (66%), Positives = 63/81 (77%)
Frame = +2
Query: 266 QRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTP 445
QR ++ L LVFVETK+GAD LE +L +P TSIHGDR Q+ERE ALR F+TG+TP
Sbjct: 401 QRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTP 460
Query: 446 ILVATAVAARGLDIPHVRHVI 508
ILVAT VAARGLDIPHV HV+
Sbjct: 461 ILVATDVAARGLDIPHVAHVV 481
Score = 91.9 bits (218), Expect = 4e-19
Identities = 39/62 (62%), Positives = 49/62 (79%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTST 687
NFDLP+D+++YVHRIGRTGR G G+AT+FFN+ N LAR L EL+ EA Q+VP WLT
Sbjct: 482 NFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRY 541
Query: 688 AA 693
A+
Sbjct: 542 AS 543
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 122 bits (293), Expect = 3e-28
Identities = 59/85 (69%), Positives = 70/85 (82%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
DMGFEPQIRKIVE MP G RQT++FSATFP QIQ LA DF+ NY+FLAVGRVGS+++
Sbjct: 317 DMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTD 376
Query: 183 NITQKVVWVDEMDKRSFLLDLLNAQ 257
ITQ+V +V E DKRS L+DLL+AQ
Sbjct: 377 LITQRVEFVQESDKRSHLMDLLHAQ 401
Score = 113 bits (272), Expect = 1e-25
Identities = 54/81 (66%), Positives = 63/81 (77%)
Frame = +2
Query: 266 QRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTP 445
QR ++ L LVFVETK+GAD LE +L +P TSIHGDR Q+ERE ALR F+TG+TP
Sbjct: 401 QRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTP 460
Query: 446 ILVATAVAARGLDIPHVRHVI 508
ILVAT VAARGLDIPHV HV+
Sbjct: 461 ILVATDVAARGLDIPHVAHVV 481
Score = 91.9 bits (218), Expect = 4e-19
Identities = 39/62 (62%), Positives = 49/62 (79%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTST 687
NFDLP+D+++YVHRIGRTGR G G+AT+FFN+ N LAR L EL+ EA Q+VP WLT
Sbjct: 482 NFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRY 541
Query: 688 AA 693
A+
Sbjct: 542 AS 543
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 118 bits (284), Expect = 4e-27
Identities = 58/85 (68%), Positives = 70/85 (82%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
DMGFEPQIRKIVE MP G RQTL+FSATFP++IQ LA DFL NY+FLAVGRVGS+++
Sbjct: 325 DMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTD 384
Query: 183 NITQKVVWVDEMDKRSFLLDLLNAQ 257
I Q+V +V + DKRS L+DLL+AQ
Sbjct: 385 LIVQRVEFVLDSDKRSHLMDLLHAQ 409
Score = 109 bits (263), Expect = 1e-24
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +2
Query: 293 LILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAA 472
L LVFVETK+GAD LE +L G+P TSIHGDR Q+ERE AL+ F++G+TPILVAT VAA
Sbjct: 420 LTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAA 479
Query: 473 RGLDIPHVRHVI 508
RGLDIPHV HV+
Sbjct: 480 RGLDIPHVAHVV 491
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/62 (64%), Positives = 49/62 (79%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTST 687
NFDLP+D+++YVHRIGRTGR G G+AT+FFND N LAR L EL+ EA Q+VP WLT
Sbjct: 492 NFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRY 551
Query: 688 AA 693
A+
Sbjct: 552 AS 553
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 118 bits (283), Expect = 5e-27
Identities = 56/85 (65%), Positives = 70/85 (82%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
DMGFEPQIRKIV+ MP G RQT++FSATFP++IQ LA DFL NY+FLAVGRVGS+++
Sbjct: 312 DMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTD 371
Query: 183 NITQKVVWVDEMDKRSFLLDLLNAQ 257
I Q+V +V + DKRS L+DLL+AQ
Sbjct: 372 LIVQRVEFVHDSDKRSHLMDLLHAQ 396
Score = 113 bits (271), Expect = 2e-25
Identities = 53/72 (73%), Positives = 61/72 (84%)
Frame = +2
Query: 293 LILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAA 472
L LVFVETKKGAD LE +L G+P T+IHGDR+Q+ERE ALR F+TG+TPILVAT VAA
Sbjct: 407 LTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAA 466
Query: 473 RGLDIPHVRHVI 508
RGLDIPHV HV+
Sbjct: 467 RGLDIPHVAHVV 478
Score = 93.1 bits (221), Expect = 2e-19
Identities = 39/62 (62%), Positives = 51/62 (82%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTST 687
NFDLP+D+++YVHRIGRTGR GN G+AT+FFND N +A+ L EL+ EA Q+VP+WLT
Sbjct: 479 NFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWLTRY 538
Query: 688 AA 693
A+
Sbjct: 539 AS 540
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/71 (54%), Positives = 53/71 (74%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
ILVF++TKKG DQ+ L G+P SIHGD++Q ER+ L FR+G++PI+ AT VAAR
Sbjct: 347 ILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAAR 406
Query: 476 GLDIPHVRHVI 508
GLD+ V++VI
Sbjct: 407 GLDVKDVKYVI 417
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/59 (49%), Positives = 36/59 (61%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTS 684
N+D P +E+YVHRIGRTGR G G A +FF N A++L +L EA Q V L S
Sbjct: 418 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELAS 476
Score = 58.4 bits (135), Expect = 5e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVG-STS 179
DMGF+PQIRKIV H P +RQTL +SAT+PK+++ L++ FLYN + +G +
Sbjct: 260 DMGFDPQIRKIVS-HIRP---DRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKAN 315
Query: 180 ENITQKVVWVDEMDKRSFLLDLL 248
I Q V + E K + L+ LL
Sbjct: 316 RAIRQIVDVISESQKYNKLVKLL 338
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 81.8 bits (193), Expect = 4e-16
Identities = 35/71 (49%), Positives = 51/71 (71%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
IL+FVETK+G DQ+ L G+P +IHGD+ Q ER+ L F++G++PI+ AT VAAR
Sbjct: 413 ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAAR 472
Query: 476 GLDIPHVRHVI 508
GLD+ ++ V+
Sbjct: 473 GLDVKDIKCVV 483
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTS 684
N+D P+ +E+Y+HRIGRTGR G G+A +FF N AR+LV++L EA Q VP L++
Sbjct: 484 NYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSA 542
Score = 54.8 bits (126), Expect = 6e-08
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVG-STS 179
DMGFEPQIRKIV P +RQTL++SAT+P++++ LA+ FL + +G +
Sbjct: 326 DMGFEPQIRKIVS-QIRP---DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKAN 381
Query: 180 ENITQKVVWVDEMDKRSFLLDLL 248
++I Q + V +K + LL LL
Sbjct: 382 QSINQVIEIVPTPEKYNRLLTLL 404
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 KCTNLLQRARPEED-QLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRR 424
K + L Q R +E I++F TK+ DQL L ++ + +IHGD++Q ER+D L +
Sbjct: 460 KHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQ 518
Query: 425 FRTGQTPILVATAVAARGLDIPHVRHVI 508
FR+G+TP+LVAT VAARGLD+ +R V+
Sbjct: 519 FRSGRTPVLVATDVAARGLDVKDIRVVV 546
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/54 (53%), Positives = 38/54 (70%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 669
N+D P+ VE+YVHRIGRTGR G G+A +FF D + A DL+++L A Q VP
Sbjct: 547 NYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVP 600
Score = 63.7 bits (148), Expect = 1e-10
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGS--T 176
DMGFEPQIRKIV + +P +RQTLM++AT+PK+++ +A D L N + +G V
Sbjct: 389 DMGFEPQIRKIV--NEVPT--KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVA 444
Query: 177 SENITQKVVWVDEMDKRSFLLDLLNAQ 257
+++ITQ + + M+K S L +L +Q
Sbjct: 445 NKSITQTIEVLAPMEKHSRLEQILRSQ 471
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/90 (44%), Positives = 55/90 (61%)
Frame = +2
Query: 260 LLQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQ 439
LL++ + +LVF K A++LE +L +G+ SIHG++ Q ER +L F+ G
Sbjct: 357 LLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGS 416
Query: 440 TPILVATAVAARGLDIPHVRHVIILIYHLT 529
P+LVAT VAARGLDIP V VI + LT
Sbjct: 417 CPLLVATDVAARGLDIPDVEVVINYTFPLT 446
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/54 (57%), Positives = 37/54 (68%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 669
N+ P E+YVHRIGRTGR G GVA +FF N+GLA +LV +L EA Q VP
Sbjct: 440 NYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVP 493
Score = 40.3 bits (90), Expect = 0.001
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGE-RQTLMFSATFPKQIQLLAQDFL-YNYVFLAVGRVG-S 173
DMGFE +R I+ T + RQ +MFSAT+P + LAQ+F+ N + + +G V +
Sbjct: 279 DMGFEEPVRFILS-----NTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLA 333
Query: 174 TSENITQKVVWVDEMDKRSFLLDLLNAQTCYNVHVPKRINLYLCLWKLRKVRI 332
+ ++ Q + +DE + L+ LL Y+ R+ L L+K+ R+
Sbjct: 334 ANHDVMQIIEVLDERARDQRLIALLEK---YHKSQKNRV-LVFALYKVEAERL 382
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 75.4 bits (177), Expect = 4e-14
Identities = 33/62 (53%), Positives = 45/62 (72%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
IL+FVETK+G DQ+ L G+P +IHGD+ Q ER+ L F++G++PI+ AT VAAR
Sbjct: 413 ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAAR 472
Query: 476 GL 481
GL
Sbjct: 473 GL 474
Score = 54.8 bits (126), Expect = 6e-08
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVG-STS 179
DMGFEPQIRKIV P +RQTL++SAT+P++++ LA+ FL + +G +
Sbjct: 326 DMGFEPQIRKIVS-QIRP---DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKAN 381
Query: 180 ENITQKVVWVDEMDKRSFLLDLL 248
++I Q + V +K + LL LL
Sbjct: 382 QSINQVIEIVPTPEKYNRLLTLL 404
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.9 bits (176), Expect = 5e-14
Identities = 35/76 (46%), Positives = 52/76 (68%)
Frame = +2
Query: 281 EEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVAT 460
E +++F TK+ DQL L Q + +IHGD++Q ER++ L +FR+G+TP+LVAT
Sbjct: 401 EPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVAT 459
Query: 461 AVAARGLDIPHVRHVI 508
VAARGLD+ +R V+
Sbjct: 460 DVAARGLDVKDIRAVV 475
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/54 (53%), Positives = 37/54 (68%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 669
N+D P+ VE+YVHRIGRTGR G G A +FF D + A DL+++L A Q VP
Sbjct: 476 NYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVP 529
Score = 61.7 bits (143), Expect = 5e-10
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGS--T 176
DMGFEPQIRKIV+ +P +RQTLM++AT+PK ++ +A D L N + +G V
Sbjct: 318 DMGFEPQIRKIVK--EIPT--KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVA 373
Query: 177 SENITQKVVWVDEMDKRSFLLDLLNAQ 257
+++ITQ + V M+K+ L +L +Q
Sbjct: 374 NKSITQHIEVVAPMEKQRRLEQILRSQ 400
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.9 bits (176), Expect = 5e-14
Identities = 35/76 (46%), Positives = 52/76 (68%)
Frame = +2
Query: 281 EEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVAT 460
E +++F TK+ DQL L Q + +IHGD++Q ER++ L +FR+G+TP+LVAT
Sbjct: 401 EPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVAT 459
Query: 461 AVAARGLDIPHVRHVI 508
VAARGLD+ +R V+
Sbjct: 460 DVAARGLDVKDIRAVV 475
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/54 (53%), Positives = 37/54 (68%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 669
N+D P+ VE+YVHRIGRTGR G G A +FF D + A DL+++L A Q VP
Sbjct: 476 NYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVP 529
Score = 61.7 bits (143), Expect = 5e-10
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGS--T 176
DMGFEPQIRKIV+ +P +RQTLM++AT+PK ++ +A D L N + +G V
Sbjct: 318 DMGFEPQIRKIVK--EIPT--KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVA 373
Query: 177 SENITQKVVWVDEMDKRSFLLDLLNAQ 257
+++ITQ + V M+K+ L +L +Q
Sbjct: 374 NKSITQHIEVVAPMEKQRRLEQILRSQ 400
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 74.9 bits (176), Expect = 5e-14
Identities = 35/76 (46%), Positives = 52/76 (68%)
Frame = +2
Query: 281 EEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVAT 460
E +++F TK+ DQL L Q + +IHGD++Q ER++ L +FR+G+TP+LVAT
Sbjct: 401 EPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVAT 459
Query: 461 AVAARGLDIPHVRHVI 508
VAARGLD+ +R V+
Sbjct: 460 DVAARGLDVKDIRAVV 475
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/54 (53%), Positives = 37/54 (68%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 669
N+D P+ VE+YVHRIGRTGR G G A +FF D + A DL+++L A Q VP
Sbjct: 476 NYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVP 529
Score = 61.7 bits (143), Expect = 5e-10
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGS--T 176
DMGFEPQIRKIV+ +P +RQTLM++AT+PK ++ +A D L N + +G V
Sbjct: 318 DMGFEPQIRKIVK--EIPT--KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVA 373
Query: 177 SENITQKVVWVDEMDKRSFLLDLLNAQ 257
+++ITQ + V M+K+ L +L +Q
Sbjct: 374 NKSITQHIEVVAPMEKQRRLEQILRSQ 400
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/71 (43%), Positives = 47/71 (66%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+L+F E K D + EYL +G +IHG ++Q +RE A+ F+ G+ +LVAT VA++
Sbjct: 400 VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASK 459
Query: 476 GLDIPHVRHVI 508
GLD P ++HVI
Sbjct: 460 GLDFPDIQHVI 470
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/55 (52%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFN-DTNRGLARDLVELLVEAKQDVP 669
N+D+P+++E YVHRIGRTGR G G+AT+F N + + DL LL EAKQ +P
Sbjct: 471 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 525
Score = 56.8 bits (131), Expect = 1e-08
Identities = 32/82 (39%), Positives = 51/82 (62%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
D+GFE IR++ + H +RQTL+FSAT P +IQ+ A+ L V + VGR G+ +
Sbjct: 316 DLGFEDDIREVFD-HFK---SQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANL 371
Query: 183 NITQKVVWVDEMDKRSFLLDLL 248
++ Q+V +V + K +LL+ L
Sbjct: 372 DVIQEVEYVKQEAKIVYLLECL 393
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/74 (45%), Positives = 48/74 (64%)
Frame = +2
Query: 287 DQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAV 466
++ +VFV TKK D + + L GY VT++HG ++Q +RE +L FR + +LVAT V
Sbjct: 576 EKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDV 635
Query: 467 AARGLDIPHVRHVI 508
RG+DIP V HVI
Sbjct: 636 VGRGIDIPDVAHVI 649
Score = 57.6 bits (133), Expect = 8e-09
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 669
N+D+P +E Y HRIGRTGR G GVATSF + + DL ++LV++ VP
Sbjct: 650 NYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVP 703
Score = 51.6 bits (118), Expect = 5e-07
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 13/96 (13%)
Frame = +3
Query: 3 DMGFEPQIRKIVEC----HTMPKTGE---------RQTLMFSATFPKQIQLLAQDFLYNY 143
DMGFEPQ+ +++ + P+ E R T MFSAT P ++ LA+ +L N
Sbjct: 477 DMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNP 536
Query: 144 VFLAVGRVGSTSENITQKVVWVDEMDKRSFLLDLLN 251
V + +G G T++ I+Q V+ + E +K L LL+
Sbjct: 537 VVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLD 572
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 71.7 bits (168), Expect = 5e-13
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+L+F E K D + EYL +G +IHG ++Q +R+ A+ F+ G+ +LVAT VA++
Sbjct: 351 VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASK 410
Query: 476 GLDIPHVRHVI 508
GLD P ++HVI
Sbjct: 411 GLDFPDIQHVI 421
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLA-RDLVELLVEAKQDVP 669
N+D+P ++E YVHRIGRTGR G G+AT+F N + DL LL EAKQ +P
Sbjct: 422 NYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIP 476
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/86 (38%), Positives = 50/86 (58%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
D+GFE IR + + H +RQTL+FSAT P +IQ+ A L V + VGR G+ +
Sbjct: 267 DLGFEDDIRHVFD-HFK---SQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANL 322
Query: 183 NITQKVVWVDEMDKRSFLLDLLNAQT 260
++ Q+V +V + K +LL+ L T
Sbjct: 323 DVIQEVEYVKQEAKIVYLLECLQKTT 348
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 68.9 bits (161), Expect = 3e-12
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
DMGFEPQIRKIV + +P RQTLM++AT+PK+++ +A D L N V + +GRV +
Sbjct: 595 DMGFEPQIRKIV--NEIPP--RRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAA 650
Query: 183 N--ITQKVVWVDEMDKRSFLLDLLNAQ 257
N ITQ V V +M+K L +L +Q
Sbjct: 651 NKAITQYVEVVPQMEKERRLEQILRSQ 677
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/54 (53%), Positives = 38/54 (70%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 669
N+D P+ VE+YVHRIGRTGR G GVA +FF + + A DL+++L A Q VP
Sbjct: 753 NYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVP 806
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/76 (40%), Positives = 47/76 (61%)
Frame = +2
Query: 281 EEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVAT 460
E +++F TK+ D L + + + IHGD+ Q ER+ L +FR+G++ +L+AT
Sbjct: 678 ERGSKVIIFCSTKRLCDHLARSV-GRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIAT 736
Query: 461 AVAARGLDIPHVRHVI 508
VAARGLDI +R VI
Sbjct: 737 DVAARGLDIKDIRVVI 752
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/70 (40%), Positives = 49/70 (70%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F T++ D L E + S + V+S+HGD+ Q+ER+D + +FR+ ++ +L+A+ V ARG
Sbjct: 265 IIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARG 324
Query: 479 LDIPHVRHVI 508
+D+ V HVI
Sbjct: 325 IDVQTVSHVI 334
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDL 633
N+D+P++ E Y+HRIGR GR G GVA +F ++ +D+
Sbjct: 335 NYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDI 376
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/70 (47%), Positives = 47/70 (67%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
+VF +TK+ AD+L Y ++ + ++HGD +Q +RE L FR G ILVAT VAARG
Sbjct: 353 IVFTQTKRDADRLS-YALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARG 411
Query: 479 LDIPHVRHVI 508
LD+P+V +I
Sbjct: 412 LDVPNVDLII 421
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFN-DTNRGL 621
+++LP++ E +VHR GRTGR G G A ++ D +R +
Sbjct: 422 HYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAV 460
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +3
Query: 6 MGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSEN 185
+GF + I+E +P+ +RQ++MFSAT P I+ L + +L N L V VG + +
Sbjct: 265 VGFAEDVEIILE--KLPE--KRQSMMFSATMPSWIRSLTKKYLNNP--LTVDLVGDSDQK 318
Query: 186 ITQKV 200
+ +
Sbjct: 319 LADGI 323
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 64.9 bits (151), Expect = 5e-11
Identities = 35/70 (50%), Positives = 47/70 (67%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
+VF +TK+ AD+L L ++ Y ++HGD +Q +RE L FR G ILVAT VAARG
Sbjct: 365 IVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARG 423
Query: 479 LDIPHVRHVI 508
LD+P+V VI
Sbjct: 424 LDVPNVDLVI 433
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVA 588
+++LP++ E +VHR GRTGR G G A
Sbjct: 434 HYELPNNTETFVHRTGRTGRAGKKGSA 460
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 66 ERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSENITQKV 200
+RQ++MFSAT P I+ L + +L N L + VG + + + +
Sbjct: 293 KRQSMMFSATMPSWIRSLTKKYLNNP--LTIDLVGDSDQKLADGI 335
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/71 (39%), Positives = 46/71 (64%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+LVF K D++E L + V ++HGD++Q R + L++F++G +L+AT VAAR
Sbjct: 476 VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAAR 535
Query: 476 GLDIPHVRHVI 508
GLDI ++ V+
Sbjct: 536 GLDIKSLKTVV 546
Score = 60.5 bits (140), Expect = 1e-09
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
D+GFEPQ+R IV P +RQTL+FSAT P +++ LA++ L + + + VG VG +E
Sbjct: 389 DLGFEPQVRSIVG-QIRP---DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANE 444
Query: 183 NITQKV-VWVDEMDKRSFLLDLL 248
+ITQ V V + +K +LL+ L
Sbjct: 445 DITQVVNVIPSDAEKLPWLLEKL 467
Score = 51.2 bits (117), Expect = 7e-07
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNL-GVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTS 684
N+D+ D++ +VHRIGRTGR G+ GVA + A +LV LV A Q+VP LT
Sbjct: 547 NYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTD 606
Query: 685 TA 690
A
Sbjct: 607 LA 608
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/70 (47%), Positives = 46/70 (65%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
+VF +TK+ AD++ L S ++HGD +Q +RE L FR G+ +LVAT VA+RG
Sbjct: 355 IVFTQTKRDADEVSLAL-SNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRG 413
Query: 479 LDIPHVRHVI 508
LDIP+V VI
Sbjct: 414 LDIPNVDLVI 423
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVA----TSFFNDTNRGLARDL 633
+++LP+D E +VHR GRTGR G G A TS T R L RD+
Sbjct: 424 HYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDV 469
Score = 36.7 bits (81), Expect = 0.016
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +3
Query: 6 MGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSEN 185
+GFE + I+E +P +RQ+++FSAT P ++ LA+ +L N L + VG E
Sbjct: 267 VGFEEAVESILE--NLPT--KRQSMLFSATMPTWVKKLARKYLDNP--LNIDLVGDQDEK 320
Query: 186 ITQKV----VWVDEMDKRSFLLDLL 248
+ + + + KR+ L DL+
Sbjct: 321 LAEGIKLYAIATTSTSKRTILSDLI 345
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/70 (40%), Positives = 44/70 (62%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F TK+ D L E + S + V+S+HGD Q+ER+ + FR+G + +L+ T V ARG
Sbjct: 278 VIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARG 337
Query: 479 LDIPHVRHVI 508
+D+ V VI
Sbjct: 338 IDVQQVSLVI 347
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 669
N+DLP++ E Y+HRIGR+GR G GVA +F + + RD+ + ++P
Sbjct: 348 NYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMP 401
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 61.7 bits (143), Expect = 5e-10
Identities = 37/82 (45%), Positives = 54/82 (65%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
DMGFEPQI +IV+ + P +RQT++FSATFP+Q++ LA+ L V + VG ++
Sbjct: 560 DMGFEPQITRIVQ-NIRP---DRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNK 615
Query: 183 NITQKVVWVDEMDKRSFLLDLL 248
+ITQ V E ++ S LL+LL
Sbjct: 616 DITQLVEIRPESERFSRLLELL 637
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/61 (44%), Positives = 40/61 (65%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTST 687
NFD P+ E+YVHR+GRTGR G G A +F ++ + A DLV+ L ++Q VP+ + +
Sbjct: 688 NFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAV 747
Query: 688 A 690
A
Sbjct: 748 A 748
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +2
Query: 398 REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVI 508
R +E ++ F++ +L+AT+VAARGLD+ + V+
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVV 687
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 61.7 bits (143), Expect = 5e-10
Identities = 37/82 (45%), Positives = 53/82 (64%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
DMGFEPQI +I++ + P ERQT++FSATFP+Q++ LA+ L V + VG ++
Sbjct: 693 DMGFEPQITRIIQ-NIRP---ERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNK 748
Query: 183 NITQKVVWVDEMDKRSFLLDLL 248
+ITQ V E D+ LL+LL
Sbjct: 749 DITQLVEVRPESDRFLRLLELL 770
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
ILVFV++++ D L + YP S+HG ++Q +RE + F+ +L+AT+VAAR
Sbjct: 779 ILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAAR 838
Query: 476 GLDIPHVRHVI 508
GLD+ + V+
Sbjct: 839 GLDVKELELVV 849
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/61 (45%), Positives = 40/61 (65%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTST 687
NFD P+ E+YVHR+GRTGR G G A +F ++ + A DLV+ L ++Q VP+ L +
Sbjct: 850 NFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKAL 909
Query: 688 A 690
A
Sbjct: 910 A 910
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 58.4 bits (135), Expect = 5e-09
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++FV+TK A ++ + L GY VTS+HG+ + +R+ ++ F+ T +L+AT V ARG
Sbjct: 344 IIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARG 403
Query: 479 LDIPHVRHVI 508
D V V+
Sbjct: 404 FDQQRVNLVV 413
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 526 DVEEYVHRIGRTGRMGNLGVATSFFND 606
D E Y+HR+GR GR G G + D
Sbjct: 427 DYEVYLHRVGRAGRFGRKGAVFNLLLD 453
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/70 (35%), Positives = 45/70 (64%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++FV T++ D L + + S+ + V++ HGD +Q R+ +R FR+G + +L+ T + ARG
Sbjct: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341
Query: 479 LDIPHVRHVI 508
+D+ V VI
Sbjct: 342 IDVQQVSLVI 351
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPN 672
NFDLP+ E Y+HRIGR+GR G GVA +F + + D+ + +++P+
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPS 406
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/70 (35%), Positives = 45/70 (64%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++FV T++ D L + + S+ + V++ HGD +Q R+ +R FR+G + +L+ T + ARG
Sbjct: 284 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 343
Query: 479 LDIPHVRHVI 508
+D+ V VI
Sbjct: 344 IDVQQVSLVI 353
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPN 672
NFDLP+ E Y+HRIGR+GR G GVA +F + + D+ +++P+
Sbjct: 354 NFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNVVVEELPS 408
Score = 27.9 bits (59), Expect = 7.5
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 9 GFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSENI 188
GF+ QI I + +P + Q +FSAT P + + + F+ V + V R T E I
Sbjct: 199 GFKDQIYDIFQL--LPS--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGI 254
Query: 189 TQKVVWVDEMD-KRSFLLDL 245
Q V VD+ + K L DL
Sbjct: 255 KQFYVNVDKEEWKLETLCDL 274
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/70 (35%), Positives = 45/70 (64%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++FV T++ D L + + S+ + V++ HGD +Q R+ +R FR+G + +L+ T + ARG
Sbjct: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341
Query: 479 LDIPHVRHVI 508
+D+ V VI
Sbjct: 342 IDVQQVSLVI 351
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPN 672
NFDLP+ E Y+HRIGR+GR G GVA +F ++ + D+ + +++P+
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELPS 406
Score = 28.3 bits (60), Expect = 5.7
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 9 GFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSENI 188
GF+ QI I + PK Q +FSAT P + + + F+ V + V R T E I
Sbjct: 197 GFKDQIYDIFQL-LPPKI---QVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGI 252
Query: 189 TQKVVWVDEMD-KRSFLLDL 245
Q V V++ D K L DL
Sbjct: 253 KQFYVNVEKEDWKLETLCDL 272
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYL-YSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+V+V ++ GAD L + G SIHG++ +ER D + F G+ P+LV+T V R
Sbjct: 361 VVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGR 420
Query: 476 GLDIPHVRHVII 511
G+D+ VR VI+
Sbjct: 421 GVDLLVVRQVIV 432
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = +1
Query: 511 FDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWL 678
FD+PS ++EY+H IGR RMG G A F N+ +R L DLV L + +P L
Sbjct: 433 FDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKEL 488
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/83 (25%), Positives = 42/83 (50%)
Frame = +3
Query: 9 GFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSENI 188
GF Q+ +I + + P Q L+FSAT ++++ + + +++G ++ +
Sbjct: 276 GFRDQVMQIFQALSQP-----QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAV 330
Query: 189 TQKVVWVDEMDKRSFLLDLLNAQ 257
Q +WVD K+ L D+L +Q
Sbjct: 331 NQLAIWVDAKQKKQKLFDILRSQ 353
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYL-YSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+V+V ++ GAD L + G SIHG++ +ER D + F G+ P+LV+T V R
Sbjct: 224 VVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGR 283
Query: 476 GLDIPHVRHVII 511
G+D+ VR VI+
Sbjct: 284 GVDLLVVRQVIV 295
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = +1
Query: 511 FDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWL 678
FD+PS ++EY+H IGR RMG G A F N+ +R L DLV L + +P L
Sbjct: 296 FDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKEL 351
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/83 (25%), Positives = 42/83 (50%)
Frame = +3
Query: 9 GFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSENI 188
GF Q+ +I + + P Q L+FSAT ++++ + + +++G ++ +
Sbjct: 139 GFRDQVMQIFQALSQP-----QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAV 193
Query: 189 TQKVVWVDEMDKRSFLLDLLNAQ 257
Q +WVD K+ L D+L +Q
Sbjct: 194 NQLAIWVDAKQKKQKLFDILRSQ 216
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+L+FV++K+ A +L + L + IH D ERE+A+ +FR G+ +L+AT V AR
Sbjct: 383 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 442
Query: 476 GLDIPHVRHVI 508
G+D + VI
Sbjct: 443 GMDFKGINCVI 453
Score = 53.6 bits (123), Expect = 1e-07
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTS 684
N+D P Y+HRIGR+GR G G A +F+ + + R++ ++ + +VP+W+ S
Sbjct: 454 NYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCEVPSWIMS 512
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTL---MFSATFPKQIQLLAQDFLYNYVFLAVGRVGS 173
D FE + K ++C + K ++ +FSAT P ++ LA+ +++ V + +GR +
Sbjct: 292 DKLFEQSLLKQIDC--VVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNT 349
Query: 174 TSENITQKVVW 206
SE + QK+V+
Sbjct: 350 ASETVKQKLVF 360
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+++F TK+ A +L+ G +HG+ Q +R D+L FR + L+AT VAAR
Sbjct: 415 VIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAAR 474
Query: 476 GLDIPHVRHVI 508
GLDI V+ VI
Sbjct: 475 GLDIIGVQTVI 485
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLAR 627
N+ P +++ YVHR+GRT R G G A +F D++R L +
Sbjct: 486 NYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLK 525
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +3
Query: 9 GFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSENI 188
GF +I ++V PK RQT++FSAT ++++ L + L + L+ +
Sbjct: 329 GFATEITELVRL--CPK--RRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGL 384
Query: 189 TQKVVWV---DEMDKRSFLLDL 245
T++VV + E ++ + LL L
Sbjct: 385 TEEVVRIRRTREANQEAVLLSL 406
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/70 (42%), Positives = 38/70 (54%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F T G L L S G+ I G Q +R AL +F+ G+ ILV T VA+RG
Sbjct: 264 MIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRG 323
Query: 479 LDIPHVRHVI 508
LDIP V VI
Sbjct: 324 LDIPSVDVVI 333
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFN 603
N+D+P++ ++Y+HR+GRT R G GV S N
Sbjct: 334 NYDIPTNSKDYIHRVGRTARAGRSGVGISLVN 365
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Frame = +2
Query: 263 LQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQT 442
L R DQ L+FV TK + + + + +GD +Q R+ + RFR +T
Sbjct: 263 LVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKT 322
Query: 443 PILVATAVAARGLDIPHVRHVI 508
+L+ T +AARG+DIP + +VI
Sbjct: 323 MLLIVTDIAARGIDIPLLDNVI 344
Score = 34.3 bits (75), Expect = 0.086
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 669
N+D P + +VHR+GR R G G A SF + DL L + + P
Sbjct: 345 NWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLSKPVRPAP 398
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +3
Query: 6 MGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSEN 185
MGF Q+ +I+ + RQTL+FSAT P + A+ L + + S +
Sbjct: 188 MGFAEQLHQILT----QLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPD 243
Query: 186 ITQKVVWVDEMDKRSFLLDLL 248
+ + V +K S LL L+
Sbjct: 244 LKLSFLTVRPEEKYSALLYLV 264
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/70 (40%), Positives = 41/70 (58%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++FV T + +L L ++H +Q R AL +F++G+ PIL+AT VA+RG
Sbjct: 306 MIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRG 365
Query: 479 LDIPHVRHVI 508
LDIP V VI
Sbjct: 366 LDIPTVDLVI 375
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/83 (31%), Positives = 46/83 (55%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSE 182
D+GF+ ++R I +C +PK+ RQTL+FSAT +Q L + F T +
Sbjct: 217 DVGFQDELRTIFQC--LPKS--RQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVD 272
Query: 183 NITQKVVWVDEMDKRSFLLDLLN 251
+TQ+ ++ D+ K +L+ +L+
Sbjct: 273 TLTQQFIFEDKDAKELYLVHILS 295
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVE 639
N+D+P D +YVHR+GRT R G G+A S +T+ L + E
Sbjct: 376 NYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEE 419
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNR-GLARDLVELLVEAKQDVPN 672
NFD P + E Y+HR+GR+GR G+LG+A + +R L R EL E KQ P+
Sbjct: 442 NFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPH 497
Score = 35.1 bits (77), Expect = 0.049
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +3
Query: 12 FEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYN-YVFLAVGRVGSTSENI 188
F+P + ++ +P++ RQ LMFSATFP ++ FL N YV + + T + I
Sbjct: 290 FQPSVEHLISF--LPES--RQILMFSATFPVTVKDFKDRFLTNPYVINLMDEL--TLKGI 343
Query: 189 TQKVVWVDEMDK 224
TQ +V+E K
Sbjct: 344 TQFYAFVEERQK 355
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F + + L + + GY IH Q R FR G LV T + RG
Sbjct: 372 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 431
Query: 479 LDIPHVRHVI 508
+DI V VI
Sbjct: 432 IDIQAVNVVI 441
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNR-GLARDLVELLVEAKQDVPN 672
NFD P + E Y+HR+GR+GR G+LG+A + +R L R EL E KQ P+
Sbjct: 442 NFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPH 497
Score = 35.1 bits (77), Expect = 0.049
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +3
Query: 12 FEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYN-YVFLAVGRVGSTSENI 188
F+P + ++ +P++ RQ LMFSATFP ++ FL N YV + + T + I
Sbjct: 290 FQPSVEHLISF--LPES--RQILMFSATFPVTVKDFKDRFLTNPYVINLMDEL--TLKGI 343
Query: 189 TQKVVWVDEMDK 224
TQ +V+E K
Sbjct: 344 TQFYAFVEERQK 355
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F + + L + + GY IH Q R FR G LV T + RG
Sbjct: 372 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 431
Query: 479 LDIPHVRHVI 508
+DI V VI
Sbjct: 432 IDIQAVNVVI 441
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+++FV++ A +L + L +P IH +Q ER + F+ G ILVAT + R
Sbjct: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGR 350
Query: 476 GLDIPHVRHVI 508
G+DI V VI
Sbjct: 351 GIDIERVNIVI 361
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSF 597
N+D+P + Y+HR+GR GR G G+A +F
Sbjct: 362 NYDMPDSADTYLHRVGRAGRFGTKGLAITF 391
Score = 35.1 bits (77), Expect = 0.049
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 66 ERQTLMFSATFPKQIQLLAQDFLYNYVFLAV-GRVGSTSENITQKVVWVDEMDKRSFLLD 242
++Q +MFSAT K+I+ + + F+ + + + V T + Q + + EM+K L D
Sbjct: 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLND 281
Query: 243 LLNA 254
LL+A
Sbjct: 282 LLDA 285
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+++FV++ A +L + L +P IH +Q ER + F+ G ILVAT + R
Sbjct: 208 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGR 267
Query: 476 GLDIPHVRHVI 508
G+DI V VI
Sbjct: 268 GIDIERVNIVI 278
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSF 597
N+D+P + Y+HR+GR GR G G+A +F
Sbjct: 279 NYDMPDSADTYLHRVGRAGRFGTKGLAITF 308
Score = 34.7 bits (76), Expect = 0.065
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 66 ERQTLMFSATFPKQIQLLAQDFLYNYVFLAV-GRVGSTSENITQKVVWVDEMDKRSFLLD 242
++Q +MFSAT K+I+ + + F+ + + + V T + Q + + EM+K L D
Sbjct: 139 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLND 198
Query: 243 LLNA 254
LL+A
Sbjct: 199 LLDA 202
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+++FV++ A +L + L +P IH +Q ER + F+ G ILVAT + R
Sbjct: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGR 350
Query: 476 GLDIPHVRHVI 508
G+DI V VI
Sbjct: 351 GIDIERVNIVI 361
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSF 597
N+D+P + Y+HR+GR GR G G+A +F
Sbjct: 362 NYDMPDSADTYLHRVGRAGRFGTKGLAITF 391
Score = 34.7 bits (76), Expect = 0.065
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 66 ERQTLMFSATFPKQIQLLAQDFLYNYVFLAV-GRVGSTSENITQKVVWVDEMDKRSFLLD 242
++Q +MFSAT K+I+ + + F+ + + + V T + Q + + EM+K L D
Sbjct: 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLND 281
Query: 243 LLNA 254
LL+A
Sbjct: 282 LLDA 285
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 47.6 bits (108), Expect = 9e-06
Identities = 29/70 (41%), Positives = 39/70 (55%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F ETK +L L ++HG+ Q +RE L FR G+ LVAT VAARG
Sbjct: 354 IIFAETKVQVSELSGLLDGS----RALHGEIPQSQREVTLAGFRNGKFATLVATNVAARG 409
Query: 479 LDIPHVRHVI 508
LDI V+ +I
Sbjct: 410 LDINDVQLII 419
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 520 PSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLAR 627
P +VE Y+HR GRTGR GN GVA + ++ ++R
Sbjct: 424 PREVEAYIHRSGRTGRAGNTGVAVTLYDSRKSSVSR 459
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +2
Query: 248 KCTNLLQRARPEEDQLILVFVETKKGADQ----LEEYLYSQGYPVTSIHGDRNQREREDA 415
K + L+ D+ ++VF T D L + + + IHGD Q R+ A
Sbjct: 261 KSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKA 320
Query: 416 LRRFRTGQTPILVATAVAARGLDIPHVRHVI 508
L F + L+ T VAARGLDIP + +V+
Sbjct: 321 LASFTKASSGALLCTDVAARGLDIPGIDYVV 351
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 511 FDLPSDVEEYVHRIGRTGRMGNLGVATSF 597
+D P D + HR GRT R+G G A F
Sbjct: 353 YDPPQDPNMFNHRAGRTARLGRQGRAIVF 381
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Frame = +2
Query: 239 GFTKCTNLLQRARPE--EDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQRERED 412
G K LLQ P + ++VF T + ++ YL + HG+ +R +
Sbjct: 352 GEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVE 411
Query: 413 ALRRFR--TGQTPILVATAVAARGLDIPHVRHVII 511
L++F+ G P LV T +AARGLD+ V HV++
Sbjct: 412 NLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVM 445
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 511 FDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELL 645
FD P + +Y+HR GRT RMG G TS + ++ LA + E +
Sbjct: 446 FDFPKNSIDYLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEEAM 490
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/71 (38%), Positives = 34/71 (47%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
I+VF T K E + V+ IHG +Q R F + IL+ T VAAR
Sbjct: 337 IMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAAR 396
Query: 476 GLDIPHVRHVI 508
GLDIP V +I
Sbjct: 397 GLDIPSVDWII 407
Score = 31.1 bits (67), Expect = 0.80
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +3
Query: 12 FEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAV--GRVGSTSEN 185
FE + KI++ +PKT RQT +FSAT +++ LA+ L + V + V GR T+E
Sbjct: 253 FEEDMNKILKI--LPKT--RQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEG 308
Query: 186 ITQKVVWVDEMDKRSFLLDLL 248
+ Q V + L+ L
Sbjct: 309 LEQGYCVVPSKQRLILLISFL 329
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 511 FDLPSDVEEYVHRIGRTGR 567
+D P EY+HR+GRT R
Sbjct: 409 YDPPDKPTEYIHRVGRTAR 427
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 377 IHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVI 508
+HG Q +R A F+T + +L++T VAARGLD P VR +I
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCII 422
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 511 FDLPSDVEEYVHRIGRTGRMGNLGVATSF 597
+D P + EYVHR+GRT R+G G A F
Sbjct: 424 YDCPGEATEYVHRVGRTARIGEKGEALLF 452
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +2
Query: 374 SIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVI 508
S HG +Q+ R+ AL F + +L+ T VAARGLDIP + +V+
Sbjct: 298 STHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVV 342
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 511 FDLPSDVEEYVHRIGRTGRMGNLGVATSF 597
+D P D + ++HR+GRT RM G A F
Sbjct: 344 YDPPQDPDVFIHRVGRTARMERQGRAIVF 372
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
+VF + + L G V ++ + QR R ++ RFR + IL+AT + ARG
Sbjct: 506 IVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARG 565
Query: 479 LDIPHVRHVI 508
+DI +VR +I
Sbjct: 566 IDIKNVRTII 575
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGR 567
++ LP E YVHR GRT R
Sbjct: 576 HYKLPHSAEVYVHRCGRTAR 595
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/71 (35%), Positives = 34/71 (47%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
I+VF T K E + I G +Q +R +F +T IL+ T VAAR
Sbjct: 403 IMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAAR 462
Query: 476 GLDIPHVRHVI 508
GLD PHV ++
Sbjct: 463 GLDFPHVDWIV 473
Score = 36.7 bits (81), Expect = 0.016
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAV--GRVGST 176
+ FE ++KI+ + +PKT RQT +FSAT +++ LA+ L + V++ V GR T
Sbjct: 315 EQNFEEDLKKIL--NLLPKT--RQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVT 370
Query: 177 SENITQKVVWVDEMDKRSFLLDLL 248
+E + Q V + FLL L
Sbjct: 371 NEGLEQGYCVVPSAMRLLFLLTFL 394
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 511 FDLPSDVEEYVHRIGRTGR 567
+D P + +Y+HR+GRT R
Sbjct: 475 YDPPDNPTDYIHRVGRTAR 493
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNR 615
NFD P E Y+HR+GR+GR G+LG+A + +R
Sbjct: 435 NFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDR 470
Score = 34.7 bits (76), Expect = 0.065
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F + + L + + GY IH Q R FR G LV T + RG
Sbjct: 365 IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRG 424
Query: 479 LDIPHVRHVI 508
+DI V VI
Sbjct: 425 IDIQAVNVVI 434
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 12 FEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYN-YVFLAVGRVGSTSENI 188
F+P + ++++ +P+ RQ LMFSATFP ++ L YV + ++ T +
Sbjct: 283 FQPSLEELIQF--LPQN--RQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQL--TLMGV 336
Query: 189 TQKVVWVDEMDK 224
TQ +V+E K
Sbjct: 337 TQYYAFVEERQK 348
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNR 615
NFD P E Y+HR+GR+GR G+LG+A + +R
Sbjct: 435 NFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDR 470
Score = 34.7 bits (76), Expect = 0.065
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F + + L + + GY IH Q R FR G LV T + RG
Sbjct: 365 IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRG 424
Query: 479 LDIPHVRHVI 508
+DI V VI
Sbjct: 425 IDIQAVNVVI 434
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 12 FEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYN-YVFLAVGRVGSTSENI 188
F+P + ++++ +P+ RQ LMFSATFP ++ L YV + ++ T +
Sbjct: 283 FQPSLEELIQF--LPQN--RQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQL--TLMGV 336
Query: 189 TQKVVWVDEMDK 224
TQ +V+E K
Sbjct: 337 TQYYAFVEERQK 348
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNR 615
NFD P E Y+HR+GR+GR G+LG+A + +R
Sbjct: 465 NFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDR 500
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
++F + + L + + GY IH Q R FR G LV T + RG
Sbjct: 395 IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRG 454
Query: 479 LDIPHVRHVI 508
+DI V VI
Sbjct: 455 IDIQAVNVVI 464
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 12 FEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYN-YVFLAVGRVGSTSENI 188
F+P I ++++ +P++ RQ LMFSATFP ++ +L Y+ + ++ T +
Sbjct: 313 FQPSIEELIQF--LPES--RQILMFSATFPVTVKSFKDRYLKKPYIINLMDQL--TLMGV 366
Query: 189 TQKVVWVDEMDK 224
TQ +V+E K
Sbjct: 367 TQYYAFVEERQK 378
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/46 (34%), Positives = 31/46 (67%)
Frame = +2
Query: 377 IHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVIIL 514
+HG ++E+AL +FR+G+T IL++T V G+D+P ++++
Sbjct: 802 LHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVM 847
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +1
Query: 514 DLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEA 654
D S +++HRIGRT R G G TS + + N RDLVE + EA
Sbjct: 499 DFASSAVDFLHRIGRTARAGQYGTVTSLYTEAN----RDLVEAIREA 541
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFR-TGQTPILVATAVAAR 475
+VF T + + + + L H + ER + L FR TG + V T AAR
Sbjct: 428 MVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRETGG--VFVCTDAAAR 485
Query: 476 GLDIPHVRHVI 508
G+D+P+V HVI
Sbjct: 486 GVDVPNVSHVI 496
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +2
Query: 290 QLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVA 469
Q ++ F+ + + L ++G +HGD + R L++F+ G+ +LV ++
Sbjct: 408 QSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELS 467
Query: 470 ARGLDIPHVRHVIIL 514
ARGLD+ V+ L
Sbjct: 468 ARGLDVAECDLVVNL 482
Score = 37.5 bits (83), Expect = 0.009
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATS 594
N +LP+D Y HR GRTGR+G G +
Sbjct: 481 NLELPTDAVHYAHRAGRTGRLGRKGTVVT 509
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/41 (41%), Positives = 32/41 (78%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQ 125
D+GF+ + KI++C +P+ +RQ+L+FSAT PK+++ ++Q
Sbjct: 545 DLGFKRDVEKIIDC--LPR--QRQSLLFSATIPKEVRRVSQ 581
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 517 LPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVE 651
+PSD E+Y+HR+GRTGR G G R +L +L +E
Sbjct: 711 IPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDELKDLPLE 755
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = +2
Query: 287 DQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAV 466
D I+VF T + L V IH + Q R F+ ILV + V
Sbjct: 634 DYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDV 693
Query: 467 AARGLDIPHVRHVI 508
+ARG++ P V VI
Sbjct: 694 SARGMNYPDVTLVI 707
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 380 HGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHV 505
HG +Q+ R+ AL F + +L+ T VAARGLDIP + ++
Sbjct: 273 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYI 314
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 350 YSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHV 505
Y + + GD N R +L R G +LV+T +AARG+D+P H+
Sbjct: 362 YKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHI 413
Score = 34.3 bits (75), Expect = 0.086
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGR 567
NFDLP V +Y+HR GR GR
Sbjct: 415 NFDLPQTVTDYLHRAGRAGR 434
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 350 YSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHV 505
Y + + GD N R +L R G +LV+T +AARG+D+P H+
Sbjct: 205 YKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHI 256
Score = 34.3 bits (75), Expect = 0.086
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGR 567
NFDLP V +Y+HR GR GR
Sbjct: 258 NFDLPQTVTDYLHRAGRAGR 277
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 281 EEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRF-RTGQTPILVA 457
E D +L+F + + D LE+YL +GY I G+ ER+ ++ + + G +
Sbjct: 504 ERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFL 563
Query: 458 TAVAARGLDIPHVRHVIILIYHLTW 532
+ A GL I ++++Y W
Sbjct: 564 LSTRAGGLGINLATADVVILYDSDW 588
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +2
Query: 320 KGADQLEEYLYSQGYP---VTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIP 490
KG +++ ++L + +P + HG + ++ E+ + RF G+ IL+ T + GLDI
Sbjct: 491 KGLEEVMDFL-EEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQ 549
Query: 491 HVRHVII 511
+ +II
Sbjct: 550 NANTIII 556
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/41 (41%), Positives = 31/41 (75%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQ 125
D+GF + KI++C +P+ +RQ+L+FSAT PK+++ ++Q
Sbjct: 498 DLGFRRDVEKIIDC--LPR--QRQSLLFSATIPKEVRRVSQ 534
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 517 LPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVE 651
+PSD E+Y+HR+GRTGR G G R +L +L +E
Sbjct: 664 IPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFLDELKDLPLE 708
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = +2
Query: 287 DQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAV 466
D I+VF T + L V IH + Q R F+ ILV + V
Sbjct: 587 DYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDV 646
Query: 467 AARGLDIPHVRHVI 508
+ARG++ P V VI
Sbjct: 647 SARGMNYPDVTLVI 660
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 281 EEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRF-RTGQTPILVA 457
+ D +L+F + + D LE+YL +GY I G+ ER+ ++ + + G +
Sbjct: 509 DRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFL 568
Query: 458 TAVAARGLDIPHVRHVIILIYHLTW 532
+ A GL I ++++Y W
Sbjct: 569 LSTRAGGLGINLATADVVILYDSDW 593
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 281 EEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRF-RTGQTPILVA 457
+ D +L+F + + D LE+YL +GY I G+ ER+ ++ + + G +
Sbjct: 509 DRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFL 568
Query: 458 TAVAARGLDIPHVRHVIILIYHLTW 532
+ A GL I ++++Y W
Sbjct: 569 LSTRAGGLGINLATADVVILYDSDW 593
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAK 657
NFD+P V Y+HRIGRTGR + G + S + D+ L K
Sbjct: 410 NFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFLASDK 459
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYS--QGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVA 469
ILVF+ TKK + E G P+ S+HG +Q +R +F Q+ +L T V
Sbjct: 319 ILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIERQS-VLFCTDVL 377
Query: 470 ARGLD 484
ARGLD
Sbjct: 378 ARGLD 382
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 514 DLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAK 657
D P DV Y+HR+GRT R G + F + + L E V K
Sbjct: 394 DCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKMIEKLQEAKVPIK 441
Score = 31.5 bits (68), Expect = 0.61
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYN--YVFLAVGRVGST 176
D F+ Q+ I+ +PK RQTL+FSAT K+++ LA+ L + Y+ + V +T
Sbjct: 232 DSAFKGQLDPIIS--QLPK--HRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTAT 287
Query: 177 SENITQKVVWVDEMDKRSFLLDLLNAQTCYNVHVPKRINLYL 302
++ Q V+ V ++K+ LD+L + H+ RI ++L
Sbjct: 288 PTSLMQTVMIV-PVEKK---LDML--WSFIKTHLNSRILVFL 323
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 517 LPSDVEEYVHRIGRTGRMGNLG 582
LPSD E+Y+HR+GRTGR G G
Sbjct: 415 LPSDREQYIHRLGRTGRKGKEG 436
Score = 35.1 bits (77), Expect = 0.049
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 475
+++F T + + L V IH + Q R FR ++ ILV + V+AR
Sbjct: 341 VIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSAR 400
Query: 476 GLDIPHVRHVI 508
G+D P V V+
Sbjct: 401 GVDYPDVSLVV 411
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFL---YNYVFLAVGRVGS 173
DMGF +I +I+ +PK +RQT +FSAT +++ + L + +V G
Sbjct: 249 DMGFRREIERIIAA--VPK--QRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGE 304
Query: 174 TSENITQKVVWVDEMDKR-SFLLDLLNAQTCYNV 272
T + ++Q + + +D+ S L LL NV
Sbjct: 305 THQKVSQ-MYMIASLDRHFSLLYGLLKKHITDNV 337
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 517 LPSDVEEYVHRIGRTGRMGNLG 582
LPSD E+Y+HR+GRTGR G G
Sbjct: 717 LPSDREQYIHRLGRTGRKGKEG 738
Score = 37.5 bits (83), Expect = 0.009
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFL---YNYVFLAVGRVGS 173
DMGF I +I+ +PK +RQT +FSAT P++++ + L + ++ G
Sbjct: 551 DMGFRRDIERIIAA--VPK--QRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGE 606
Query: 174 TSENITQKVVWVDEMDKRSFLLDLL 248
T + +TQ + + +D+ LL +L
Sbjct: 607 THQKVTQ-MYMIASLDRHFSLLHVL 630
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +2
Query: 287 DQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAV 466
D +++F T + + L V IH + Q R FR + ILV + V
Sbjct: 640 DYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDV 699
Query: 467 AARGLDIPHVRHVI 508
+ARG+D P V V+
Sbjct: 700 SARGVDYPDVSLVV 713
>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1090
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +2
Query: 257 NLLQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTG 436
+LL+ PE + +L+F +T+K + +++ L S GY I G +R + F+ G
Sbjct: 739 SLLENLIPEGHR-VLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEG 797
Query: 437 Q-TPILVATA-VAARGLDIPHVRHVIIL 514
PI + T+ V GL + VI++
Sbjct: 798 HVAPIFLLTSQVGGLGLTLTKADRVIVV 825
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
L+F + K D LE ++ GY + G ER+ ++RF T L + + G
Sbjct: 1095 LIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRSGG 1154
Query: 479 LDIPHVRHVIILIYHLTW 532
+ I V ++ Y W
Sbjct: 1155 VGINLVGADTVIFYDSDW 1172
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 511 FDLPSDVEEYVHRIGRTGR-MGNLGVATSFFNDTNRGLARDLVELLVEAK--QDVPN 672
FD P D EYV R+GRT R G A F GLAR ++E + DVPN
Sbjct: 719 FDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQVGLARRIIERNEKGHPVHDVPN 775
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 36.7 bits (81), Expect = 0.016
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 517 LPSDVEEYVHRIGRTGRMGNLG 582
LP D E+Y+HR+GRTGR G G
Sbjct: 389 LPKDREQYIHRLGRTGRKGKEG 410
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +2
Query: 287 DQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAV 466
D ++VF T + + L V IH + Q R FR + ILV + V
Sbjct: 312 DYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDV 371
Query: 467 AARGLDIPHVRHVI 508
+ARG+D P V V+
Sbjct: 372 SARGVDYPDVTLVL 385
Score = 34.7 bits (76), Expect = 0.065
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 3 DMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQ 113
DMGF I +I+ +PK ERQT +FSAT P++++
Sbjct: 223 DMGFRKDIERIISA--VPK--ERQTFLFSATVPEEVR 255
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLGVATSFF-NDT 609
+F +P +EEYV IGR GR G L F+ NDT
Sbjct: 560 HFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDT 594
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = +2
Query: 260 LLQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQ 439
L++ +E + I+V+ + + D + +YL H ++R F + +
Sbjct: 477 LMESPPYKEIRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNK 536
Query: 440 TPILVATAVAARGLDIPHVRHVI 508
++VAT GLD V VI
Sbjct: 537 IRVVVATVAFGMGLDKGDVGAVI 559
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 35.9 bits (79), Expect = 0.028
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 308 VETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDI 487
VET + +L + G NQ R L+ FR G +LVA+ RG+D+
Sbjct: 335 VETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDV 394
Query: 488 PHVRHVI 508
V +VI
Sbjct: 395 KGVTNVI 401
Score = 31.9 bits (69), Expect = 0.46
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 508 NFDLPSDVEEYVHRIGRTGRMGNLG 582
N+D+P + ++HR GRT R G G
Sbjct: 402 NYDMPPFAKTFIHRAGRTARAGQAG 426
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Frame = +2
Query: 233 FIGFTKCTNLLQRARPEEDQ-----LILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQ 397
F C LL+ P E Q L +++V T+K + + +YL G + + +
Sbjct: 475 FCAMPSC-ELLEIPVPSEKQKDLEGLTIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPK 533
Query: 398 REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVI 508
+ + F + ++VAT G+D +VR +I
Sbjct: 534 KHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKII 570
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 401 EREDALRRFRTGQTPILVATAVAARGLDI 487
+ +D + +FR G +LVAT+VA GLDI
Sbjct: 711 QMQDTISKFRDGHVTLLVATSVAEEGLDI 739
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 389 RNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVI 508
++Q+ ++ L +FR G ++VAT++ GLDI V VI
Sbjct: 511 QSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVI 550
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
+++ + D L +L S G + H N + R L + + + I+VAT G
Sbjct: 167 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 226
Query: 479 LDIPHVRHV 505
+D VR V
Sbjct: 227 IDKKDVRMV 235
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +2
Query: 299 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 478
+++ + D L +L S G + H N + R L + + + I+VAT G
Sbjct: 260 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 319
Query: 479 LDIPHVRHV 505
+D VR V
Sbjct: 320 IDKKDVRMV 328
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.1 bits (67), Expect = 0.80
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 284 EDQLILVFVETKKGADQLEEYLYSQGYPVTSI-HGDRNQREREDALRRFRTGQTPILVAT 460
+DQ +V+ +K + ++L + T H ++R D R+++TG+ I+ AT
Sbjct: 426 KDQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCAT 485
Query: 461 AVAARGLDIPHVRHVI 508
G+D VR VI
Sbjct: 486 IAFGMGIDKADVRFVI 501
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 31.1 bits (67), Expect = 0.80
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTP---ILVATAV 466
+L+F K D LEEYL + I G + +RE A+ F T L++
Sbjct: 1327 VLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRA 1386
Query: 467 AARGLDIPHVRHVII 511
A RGL++ V+I
Sbjct: 1387 AGRGLNLQTADTVVI 1401
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 31.1 bits (67), Expect = 0.80
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 296 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTP---ILVATAV 466
+L+F K D LEEYL + I G + +RE A+ F T L++
Sbjct: 1326 VLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRA 1385
Query: 467 AARGLDIPHVRHVII 511
A RGL++ V+I
Sbjct: 1386 AGRGLNLQTADTVVI 1400
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +2
Query: 281 EEDQLILVFVETKKGADQLEEYLYSQGYPVT--SIHGDRNQREREDALRRFRTGQTPILV 454
+E +L+F + K D LE+YL + P T + G +R+ A+ RF + +
Sbjct: 1004 KEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADRQAAIARFNQDKNRFVF 1063
Query: 455 ATAVAARGLDIPHVRHVIILIY 520
+ A GL I ++IY
Sbjct: 1064 LLSTRACGLGINLATADTVIIY 1085
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 392 NQREREDALRRFRTGQTPILVATAVAARGLDI 487
++R E L+RF++ + +LVAT V GLDI
Sbjct: 556 SRRSMETILKRFQSKELNLLVATKVGEEGLDI 587
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 380 HGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVIIL 514
H + +RE +FR G +L++TA A G+++P H +I+
Sbjct: 811 HAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLP--AHTVII 853
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +2
Query: 260 LLQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQ 439
LL R R E +L+F + + D L EYL +G+ + G R+ A+ F
Sbjct: 945 LLVRLR-ETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPA 1003
Query: 440 TP---ILVATAVAARGLDIPHVRHVII 511
+ L++T G+++ V+I
Sbjct: 1004 SDDFCFLLSTRAGGLGINLATADTVVI 1030
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA repair
protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1132
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 350 YSQGYPVTSIHGDRNQREREDALRRFR---TGQTPILVATAVAARGLDIPHVRHVIIL 514
+++G + +HG QR+R+ + F +G +L +T + G+ + V+IL
Sbjct: 969 WTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVIL 1026
>At4g20850.1 68417.m03025 subtilase family protein contains similarity
to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II)
(Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo
sapiens]
Length = 1380
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 260 LLQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQRERE 409
LL + PE+D+ + + + DQL + LY +G + I + ++E E
Sbjct: 1231 LLDKTEPEDDEAEKLKKKMEVTRDQLADALYQKGLAMARIENLKGEKEGE 1280
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 251 CTNLLQRARPEEDQLILVFVETKKGADQLE 340
C L A+ + D+ L F E KKG+DQL+
Sbjct: 527 CATLPYEAKYKHDKHFLTFREGKKGSDQLD 556
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 248 KCTNLLQRARPEEDQLILVFVETKKGADQLE 340
+C L +A+ + D+ L F E K+G+DQL+
Sbjct: 506 RCATLPYKAKYKHDKHFLTFREGKEGSDQLD 536
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 386 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVI 508
++ ++++ + + FR G I+VAT++ GLD+ VI
Sbjct: 429 NQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVI 469
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +2
Query: 281 EEDQLILVFVETKKGADQLEEYLYS--QGYPVTSIHGDRNQ----REREDALRRFRTGQT 442
+E +L+F ++KG + ++ + PV ++ G+ ++ R DALRR +G
Sbjct: 227 QEGNSVLIFCSSRKGCESTARHISKLIKNVPV-NVDGENSEFMDIRSAIDALRRSPSGVD 285
Query: 443 PILVAT 460
P+L T
Sbjct: 286 PVLEET 291
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +2
Query: 287 DQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILV-ATA 463
D +L F + D +E+YL +GY + G + +R + F +P + +
Sbjct: 1089 DHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLS 1148
Query: 464 VAARGLDIPHVRHVIILIYHLTW 532
+ A G+ + ++++ W
Sbjct: 1149 IRAGGVGVNLQAADTVILFDTDW 1171
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +2
Query: 287 DQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILV-ATA 463
D +L F + D +E+YL +GY + G + +R + F +P + +
Sbjct: 1089 DHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLS 1148
Query: 464 VAARGLDIPHVRHVIILIYHLTW 532
+ A G+ + ++++ W
Sbjct: 1149 IRAGGVGVNLQAADTVILFDTDW 1171
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = +2
Query: 281 EEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRT-GQTPILVA 457
E+ +L++ + + D LE+Y + + I G ER+ + RF
Sbjct: 609 EQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFL 668
Query: 458 TAVAARGLDIPHVRHVIILIYHLTW 532
+ A GL I ++IY W
Sbjct: 669 LSTRAGGLGINLATADTVIIYDSDW 693
>At5g40855.1 68418.m04961 hypothetical protein
Length = 78
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 243 LLNAQTCYNVHVPKRINLYLCLWKLR 320
LL+ TC+ VPKR +L C ++L+
Sbjct: 35 LLHLDTCHTFLVPKRYDLVKCKYQLK 60
>At2g38860.2 68415.m04775 proteaseI (pfpI)-like protein (YLS5)
contains Pfam profile PF01965: DJ-1/PfpI family;
supporting cDNA gi|13122287|dbj|AB047808.1|; identical
to proteaseI (pfpI)-like protein [Arabidopsis thaliana]
GI:13122288, cDNA proteaseI (pfpI)-like protein
GI:13122287
Length = 398
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 562 LYDRYDGRILPRQMVDQNYYVTYVRYV*ASCSDSCCHKYWCL 437
+YD DGR +P + N++VT AS D C Y C+
Sbjct: 256 VYDLEDGRQIPAEKRGHNFFVT------ASWDDICVDDYDCV 291
>At2g38860.1 68415.m04774 proteaseI (pfpI)-like protein (YLS5)
contains Pfam profile PF01965: DJ-1/PfpI family;
supporting cDNA gi|13122287|dbj|AB047808.1|; identical
to proteaseI (pfpI)-like protein [Arabidopsis thaliana]
GI:13122288, cDNA proteaseI (pfpI)-like protein
GI:13122287
Length = 389
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 562 LYDRYDGRILPRQMVDQNYYVTYVRYV*ASCSDSCCHKYWCL 437
+YD DGR +P + N++VT AS D C Y C+
Sbjct: 247 VYDLEDGRQIPAEKRGHNFFVT------ASWDDICVDDYDCV 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,749,294
Number of Sequences: 28952
Number of extensions: 291089
Number of successful extensions: 1018
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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