Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20930
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.40 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.2  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    24   1.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.6  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   8.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 175  GPIQPISRQRFCKEASFCSTKFDILR*IHLLFSFEVIFIKIPEINWD 35
            GP QP S    C E +F +   D  R +H L+    +F   P ++WD
Sbjct: 1272 GP-QPYSA---CSENAFAAYPGDCTRYLHCLWGKYEVFNCAPGLHWD 1314


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 717 KDSLHPYKLSNLLFVTESLTLIAGAFKSPSRNILYKLCTPVVVSSVIPFTSFKRSG--YL 544
           +D + P  + N++   ++   I   F   +R   +KL T  +    +    +K SG  Y 
Sbjct: 175 QDEVKPRGVLNIIPKQDNFRAIVSIFPDSARKPFFKLLTSKIYK--VLEEKYKTSGSLYT 232

Query: 543 VWTKFVK 523
            W++F +
Sbjct: 233 CWSEFTQ 239


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = -1

Query: 753 IIMSVALLIPSSKDSLHPYKLSNLLFVTESLTLIAGAFKSPSRNILYKLCTPVVVSSVIP 574
           I M   L++    +SL  Y   N +F   + T     F+S    ILY +   V+  S + 
Sbjct: 17  IKMEEKLVVEKFLNSLQIYLQHNQIFGFVTFTCTRSNFRSSKLLILYNIILQVLFVSFVS 76

Query: 573 F 571
           +
Sbjct: 77  Y 77


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -1

Query: 747 MSVALLIPSSKDSLHPYKLSNLLFVTESLTLIAGAFKSPSRNILYKLCTPVVVSSVIPF 571
           M   L++    +SL  Y   N +F   + T     F+S    ILY +   V+  S + +
Sbjct: 1   MEEKLVVEKFLNSLQIYLQHNQIFGFVTFTCTRSNFRSSKLLILYNIILQVLFVSFVSY 59


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 414 IYAWKGETDDEYIWCIEQ 467
           ++ W  ETDD + +C E+
Sbjct: 347 VFIWSIETDDMHEFCGEK 364


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 514 IIKIILRGFPSGKINVCSIHQIYSSSVSPF 425
           +++++     +GK  +C+IHQ  S   S F
Sbjct: 258 VMQVLKEMAMTGKTVICTIHQPSSEVYSMF 287


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 514 IIKIILRGFPSGKINVCSIHQIYSSSVSPF 425
           +++++     +GK  +C+IHQ  S   S F
Sbjct: 258 VMQVLKEMAMTGKTVICTIHQPSSEVYSMF 287


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,731
Number of Sequences: 336
Number of extensions: 4316
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)