Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20930
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   155   9e-39
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    29   1.0  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   2.4  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    27   4.1  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   7.2  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    25   9.5  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   9.5  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  155 bits (375), Expect = 9e-39
 Identities = 69/86 (80%), Positives = 80/86 (93%)
 Frame = +2

Query: 506 LDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKAPAINVNDSVTKSK 685
           LDDGGDLT LVH ++P+LL D++GI+EETTTGVHNLYKMF+E  LK PAINVNDSVTKSK
Sbjct: 130 LDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSVTKSK 189

Query: 686 FDNLYGCRESLLDGIKRATDIMIAGK 763
           FDNL+GC+ESL+DGIKRATD+MIAGK
Sbjct: 190 FDNLFGCKESLVDGIKRATDVMIAGK 215



 Score =  146 bits (353), Expect = 4e-36
 Identities = 66/86 (76%), Positives = 75/86 (87%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 KGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGE 434
           KGARIAG LHMT+QTAVLIETL+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGE
Sbjct: 45  KGARIAGCLHMTIQTAVLIETLVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGE 104

Query: 435 TDDEYIWCIEQTL-IFPDGKPLNMIL 509
           T++EY+WCIEQ L  FP GKPLNMIL
Sbjct: 105 TEEEYLWCIEQQLKSFPSGKPLNMIL 130



 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = +1

Query: 139 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILK 258
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LK
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLK 45



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 760 EVCVVAGYGDVGK 798
           +V VVAG+GDVGK
Sbjct: 215 KVAVVAGFGDVGK 227


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 778 LPLHKLPGNHYVCCPFDSVEQRLPTSIQVVEFA 680
           LP+ KLP NH +C  F S+ +   TS   V FA
Sbjct: 2   LPIWKLPVNHLLCHSFKSIPR---TSAYAVRFA 31


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 594 VVSSVIPFTSFKRSGYLV-WTKFVKSPPSSRSY*E 493
           VV ++I +  FK   YL   ++FVK  PS++SY E
Sbjct: 612 VVQAIIHYERFKLRKYLGNMSEFVKKVPSAKSYYE 646


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 242 GAYFRRHAIRPGISFSANIISFRPHSANFSS 150
           G+  R  A++PG +   +I  +RP   NF+S
Sbjct: 27  GSVRRERAVKPGYTAPEDIKRYRPGRGNFAS 57


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 249 FSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVSDFVRRLHFVVQSLIY 103
           ++W  F  T +K  H+FL  H +   P + F+         F V S+++
Sbjct: 363 WTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLH 409


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 521 DLTNLVHTKYPDLLKDVKG 577
           D  N + TK+P ++KDV+G
Sbjct: 376 DRLNKLQTKFPHVMKDVRG 394


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = -1

Query: 639 KSPSRNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSRSY*EAFHQGRSMFVQ 460
           +SP + +L ++ + + + SVIP  +  R+ + +     KS  S   Y +  + GR+ +V+
Sbjct: 353 ESPQQFVLVQIASSLTMMSVIPLITMSRTVFRLNVLMTKSMDSYVVYRK--NMGRNFYVK 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,684
Number of Sequences: 5004
Number of extensions: 71890
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)