Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20930
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888 103 1e-22
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 29 5.7
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 29 5.7
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 28 7.5
12_01_0680 + 5797152-5797481,5797816-5798331,5798868-5798944,580... 28 9.9
11_06_0585 - 25230630-25230743,25230840-25231122,25231203-252313... 28 9.9
09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110... 28 9.9
03_06_0678 - 35480711-35484658 28 9.9
>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
Length = 433
Score = 103 bits (248), Expect = 1e-22
Identities = 49/74 (66%), Positives = 58/74 (78%)
Frame = +2
Query: 542 TKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKAPAINVNDSVTKSKFDNLYGCRESLL 721
+KY + + + G++EETTTGV LY+M G L PAINVNDSVTKSKFDNLYGCR SL
Sbjct: 156 SKYRKMKERLVGVSEETTTGVKRLYQMQETGALLFPAINVNDSVTKSKFDNLYGCRHSLP 215
Query: 722 DGIKRATDIMIAGK 763
DG+ RATD+MIAGK
Sbjct: 216 DGLMRATDVMIAGK 229
Score = 59.3 bits (137), Expect = 4e-09
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 KGARIAGSLHMTVQTAVLIETLIELGAEVQW-SSSNIYSTQDEAAAALVAVGIPIYAWKG 431
KGARI+GSLH T+Q AVLIETL LG ++ ++AWKG
Sbjct: 18 KGARISGSLHRTIQAAVLIETLTALGRRGPLVLLQHLLHAGPRRRPPSPRDSAAVFAWKG 77
Query: 432 ETDDEYIWCIEQTLIFPDGKPLNMIL 509
ET +EY WC E+ L + G ++I+
Sbjct: 78 ETLEEYWWCTERCLDWGVGAGPDLIV 103
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 205 MPGLMACRRKYAPAKILK 258
MPGLMACR ++ P++ K
Sbjct: 1 MPGLMACRAEFGPSQPFK 18
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 509 DDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKM 622
DD + +L H Y D +KD K E +HN KM
Sbjct: 448 DDDNFIISLDHKHYADHIKDHKADAEYLNKPIHNYSKM 485
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 28.7 bits (61), Expect = 5.7
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Frame = +3
Query: 222 MSSEICSS*NTKGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVA 401
+S +C S N GARI S + + + + T L A+V+ SS + Q +
Sbjct: 851 LSEGLCLSLN--GARIMKSTRIQI-SCIPFGTSSLLDAKVESSSKRDWVVQGLDVHICMP 907
Query: 402 VGIPIYAWKGETDD-----EYIWCIEQTLIFPDGK 491
+P+ A + +D + I ++T++FPDGK
Sbjct: 908 YRLPLRAIEDAVEDMIRALKLISAAKKTMLFPDGK 942
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -1
Query: 651 AGAFKSPSRNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSS 508
AG+ + P ++ + P+ +++ PF SF+ ++V + V SPP++
Sbjct: 98 AGSARLPYPDVKWAAVPPLAIAAGAPFASFRAERWIVVS--VSSPPTA 143
>12_01_0680 +
5797152-5797481,5797816-5798331,5798868-5798944,
5800706-5800778,5801689-5801786,5801868-5801964,
5802451-5802516,5802717-5802764,5803223-5803297,
5803913-5803970,5804553-5804611,5805098-5805160,
5805161-5805205,5805490-5805588,5805713-5805760,
5805884-5805931,5806008-5806064
Length = 618
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 509 DDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKM 622
DD + +L H Y D +KD K E +HN KM
Sbjct: 92 DDENFIISLDHKHYADHIKDHKADAEYLNKPIHNYGKM 129
>11_06_0585 -
25230630-25230743,25230840-25231122,25231203-25231373,
25231451-25232298,25232384-25232812,25232889-25233266,
25233396-25233488
Length = 771
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 576 PFTSFKRSGYLVWTKF--VKSPPSSRSY*EAFHQGRSMFVQYTKYTRHQFLPSRHRWV 409
PF + +VW +F KS P SR+ EA+ + ++ V + + +H WV
Sbjct: 47 PFRKYPFISRVVWEEFHTTKSTPESRAKSEAYRRLQAKNVHPHRLGTGGYAGKQHEWV 104
>09_04_0606 +
18909065-18909218,18909674-18909737,18910895-18911023,
18913680-18913830,18914369-18914491,18915638-18915711,
18916048-18916591,18916948-18917085,18917159-18917203
Length = 473
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 378 RLVYYKCYCWTIVPLLPILLKSQ*EPLFVLSCVSCRLFWHL*YFS 244
+L +C W VPLL L+ Q EP + S +FW L + S
Sbjct: 318 KLTCRECKDWRCVPLLWYLIMVQLEPSELPMAFSKAVFWALSHIS 362
>03_06_0678 - 35480711-35484658
Length = 1315
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +2
Query: 467 NIDLP*WKASQYDLDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKA 646
N D W+A +Y+L GG ++++ T + + +E + NL + F E ++K
Sbjct: 289 NRDASKWEALKYNLKHGGSGSSVLTTTRDQAVAQLMAPAQE-VYDLKNLNESFIEEIIKR 347
Query: 647 PAIN 658
A N
Sbjct: 348 SAFN 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,065,123
Number of Sequences: 37544
Number of extensions: 439832
Number of successful extensions: 1037
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -