Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20930
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)             156   2e-38
SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)               82   4e-16
SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19)               29   3.3  
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)                     29   5.8  
SB_58897| Best HMM Match : Ion_trans_2 (HMM E-Value=4.8e-14)           28   7.6  
SB_44279| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_21598| Best HMM Match : DUF1642 (HMM E-Value=9.6)                   28   7.6  

>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score =  156 bits (378), Expect = 2e-38
 Identities = 69/85 (81%), Positives = 77/85 (90%)
 Frame = +3

Query: 255 KGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGE 434
           KGARIAG LHMT+QTAVLIETL ELGAEVQWSS NI+STQD AAAA+   G+P+YAWKGE
Sbjct: 48  KGARIAGCLHMTIQTAVLIETLTELGAEVQWSSCNIFSTQDHAAAAIAKTGVPVYAWKGE 107

Query: 435 TDDEYIWCIEQTLIFPDGKPLNMIL 509
           TD+EYIWCIEQTL+F DG+PLNMIL
Sbjct: 108 TDEEYIWCIEQTLVFKDGQPLNMIL 132



 Score =  145 bits (352), Expect = 3e-35
 Identities = 67/88 (76%), Positives = 76/88 (86%)
 Frame = +2

Query: 506 LDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKAPAINVNDSVTKSK 685
           LDDGGDLTNLVH KY   L+ ++G++EETTTGVHNLYKM  +G LK  AINVNDSVTKSK
Sbjct: 132 LDDGGDLTNLVHEKYTQYLEGIRGLSEETTTGVHNLYKMMEKGKLKITAINVNDSVTKSK 191

Query: 686 FDNLYGCRESLLDGIKRATDIMIAGKFV 769
           FDNLYG RESL+DG+KRATDIM+AGK V
Sbjct: 192 FDNLYGIRESLVDGLKRATDIMLAGKVV 219



 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +1

Query: 130 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILK 258
           K PYK+AD  LAEWGRKEI+LAE EMPGLMA R++Y P+K LK
Sbjct: 6   KLPYKVADISLAEWGRKEIVLAENEMPGLMALRKEYGPSKPLK 48


>SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 35/69 (50%), Positives = 53/69 (76%)
 Frame = +3

Query: 303 VLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFP 482
           VLIETL+ LGA+++W + NIYSTQ+E AAA+   G+ I+AWKGE+++++ WCIE+ +   
Sbjct: 125 VLIETLMALGAQIRWCACNIYSTQNEVAAAMAESGLSIFAWKGESEEDFWWCIEKCITSN 184

Query: 483 DGKPLNMIL 509
             +P NM+L
Sbjct: 185 GWQP-NMVL 192



 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%)
 Frame = +2

Query: 506 LDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKAPAINVNDSVTK 679
           LDDGGD T+L++ K+      +KGI EE+ TGVH LY++ ++G L  PA+NVNDSVTK
Sbjct: 192 LDDGGDATHLMYKKFNGTFNTLKGIVEESVTGVHRLYQLSKQGKLTVPAMNVNDSVTK 249


>SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19)
          Length = 69

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 476 DQCLFNTPNILVISFSLPGIDGYSYGNQCSCGLVLCTINVT 354
           D+C+   P    I+  + G DG +YGN+C  G   C  N T
Sbjct: 22  DKCVRPCP---AINDPVCGTDGKTYGNECMLGAATCHSNGT 59


>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 293

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 422 GIDGYSYGNQCSCGLVLCTINVT 354
           G DG +YGN+C  G   C  N T
Sbjct: 57  GTDGKTYGNKCMLGAATCRSNGT 79


>SB_58897| Best HMM Match : Ion_trans_2 (HMM E-Value=4.8e-14)
          Length = 510

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 464 TNIDLP*WKASQYDLDDGGDLTNLVHTKYPDLLKD 568
           T+I LP   A + +LDDG D T   + K+P L+ D
Sbjct: 101 TDIALPITSALENELDDGDDPTFDYYQKHPHLVFD 135


>SB_44279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 699 YKLSNLLFVTESLTLIAGAFKSPSRNILYKLC 604
           +K  N  F+  SL+ I   F +   NILY LC
Sbjct: 119 FKFVNRDFIDVSLSAIVTLFDNEKHNILYSLC 150


>SB_21598| Best HMM Match : DUF1642 (HMM E-Value=9.6)
          Length = 151

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 133 PPYKIADEKLAEWG--RKEIMLAEKEMPG 213
           PP+ +A  +L +WG  RKE++   ++MPG
Sbjct: 119 PPHNVAVTELKDWGQFRKEVVKWLEKMPG 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,810,549
Number of Sequences: 59808
Number of extensions: 518415
Number of successful extensions: 1181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)