Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20930
(798 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S57284-1|AAB25906.1| 437|Caenorhabditis elegans S-adenosylhomoc... 150 1e-36
M64306-1|AAA28062.1| 437|Caenorhabditis elegans S-adenosylhomoc... 150 1e-36
AF043699-5|AAB97565.1| 437|Caenorhabditis elegans Hypothetical ... 150 1e-36
AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical ... 31 0.96
U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 29 3.9
>S57284-1|AAB25906.1| 437|Caenorhabditis elegans
S-adenosylhomocysteine hydrolase protein.
Length = 437
Score = 150 bits (364), Expect = 1e-36
Identities = 69/96 (71%), Positives = 79/96 (82%)
Frame = +3
Query: 222 MSSEICSS*NTKGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVA 401
M S+ S KGARIAG LHMT+QTAVLIETL LGAEVQWSS NI+STQD AAAA+
Sbjct: 36 MRSKYGPSQPLKGARIAGCLHMTIQTAVLIETLTALGAEVQWSSCNIFSTQDHAAAAIAQ 95
Query: 402 VGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLNMIL 509
G+P+YAWKGETD+EY WCIEQT++F DG+PLNMIL
Sbjct: 96 TGVPVYAWKGETDEEYEWCIEQTIVFKDGQPLNMIL 131
Score = 144 bits (350), Expect = 5e-35
Identities = 67/86 (77%), Positives = 74/86 (86%)
Frame = +2
Query: 506 LDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKAPAINVNDSVTKSK 685
LDDGGDLTNLVH KYP L ++G++EETTTGVHNL KM +G LK PAINVNDSVTKSK
Sbjct: 131 LDDGGDLTNLVHAKYPQYLAGIRGLSEETTTGVHNLAKMLAKGDLKVPAINVNDSVTKSK 190
Query: 686 FDNLYGCRESLLDGIKRATDIMIAGK 763
FDNLYG RESL DGIKRATD+M+AGK
Sbjct: 191 FDNLYGIRESLPDGIKRATDVMLAGK 216
Score = 66.1 bits (154), Expect = 3e-11
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = +1
Query: 130 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILK 258
KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LK
Sbjct: 5 KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLK 47
>M64306-1|AAA28062.1| 437|Caenorhabditis elegans
S-adenosylhomocysteine hydrolase protein.
Length = 437
Score = 150 bits (364), Expect = 1e-36
Identities = 69/96 (71%), Positives = 79/96 (82%)
Frame = +3
Query: 222 MSSEICSS*NTKGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVA 401
M S+ S KGARIAG LHMT+QTAVLIETL LGAEVQWSS NI+STQD AAAA+
Sbjct: 36 MRSKYGPSQPLKGARIAGCLHMTIQTAVLIETLTALGAEVQWSSCNIFSTQDHAAAAIAQ 95
Query: 402 VGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLNMIL 509
G+P+YAWKGETD+EY WCIEQT++F DG+PLNMIL
Sbjct: 96 TGVPVYAWKGETDEEYEWCIEQTIVFKDGQPLNMIL 131
Score = 144 bits (350), Expect = 5e-35
Identities = 67/86 (77%), Positives = 74/86 (86%)
Frame = +2
Query: 506 LDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKAPAINVNDSVTKSK 685
LDDGGDLTNLVH KYP L ++G++EETTTGVHNL KM +G LK PAINVNDSVTKSK
Sbjct: 131 LDDGGDLTNLVHAKYPQYLAGIRGLSEETTTGVHNLAKMLAKGDLKVPAINVNDSVTKSK 190
Query: 686 FDNLYGCRESLLDGIKRATDIMIAGK 763
FDNLYG RESL DGIKRATD+M+AGK
Sbjct: 191 FDNLYGIRESLPDGIKRATDVMLAGK 216
Score = 66.1 bits (154), Expect = 3e-11
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = +1
Query: 130 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILK 258
KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LK
Sbjct: 5 KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLK 47
>AF043699-5|AAB97565.1| 437|Caenorhabditis elegans Hypothetical
protein K02F2.2 protein.
Length = 437
Score = 150 bits (364), Expect = 1e-36
Identities = 69/96 (71%), Positives = 79/96 (82%)
Frame = +3
Query: 222 MSSEICSS*NTKGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVA 401
M S+ S KGARIAG LHMT+QTAVLIETL LGAEVQWSS NI+STQD AAAA+
Sbjct: 36 MRSKYGPSQPLKGARIAGCLHMTIQTAVLIETLTALGAEVQWSSCNIFSTQDHAAAAIAQ 95
Query: 402 VGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLNMIL 509
G+P+YAWKGETD+EY WCIEQT++F DG+PLNMIL
Sbjct: 96 TGVPVYAWKGETDEEYEWCIEQTIVFKDGQPLNMIL 131
Score = 144 bits (350), Expect = 5e-35
Identities = 67/86 (77%), Positives = 74/86 (86%)
Frame = +2
Query: 506 LDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKAPAINVNDSVTKSK 685
LDDGGDLTNLVH KYP L ++G++EETTTGVHNL KM +G LK PAINVNDSVTKSK
Sbjct: 131 LDDGGDLTNLVHAKYPQYLAGIRGLSEETTTGVHNLAKMLAKGDLKVPAINVNDSVTKSK 190
Query: 686 FDNLYGCRESLLDGIKRATDIMIAGK 763
FDNLYG RESL DGIKRATD+M+AGK
Sbjct: 191 FDNLYGIRESLPDGIKRATDVMLAGK 216
Score = 66.1 bits (154), Expect = 3e-11
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = +1
Query: 130 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILK 258
KP YK+AD KLA++GRKEI+LAE EMPGLMA R KY P++ LK
Sbjct: 5 KPAYKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLK 47
>AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical
protein C30F12.7 protein.
Length = 373
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 784 HNLPLHKLPGNHYVCC-PFDSVEQRLPTSIQVVEFAFCY*IVNVD 653
H LPL K G H VC P D + + I+ + F+FC+ VN +
Sbjct: 25 HRLPLAKYGGRHTVCALPGDGIGPEMIAHIRNI-FSFCHAPVNFE 68
>U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase
protein 15 protein.
Length = 470
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 551 PDLLKDVKGITEETTTGVHNL 613
PDL DVK +TEE T VH+L
Sbjct: 316 PDLEDDVKFLTEELTLSVHDL 336
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,564,672
Number of Sequences: 27780
Number of extensions: 404664
Number of successful extensions: 1014
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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